Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3845 ATGTTGCAGTTTCATCCTCAAGGAGCTTCTAAACAGACTTGTACTGTTCTTGCTGTTACTTCTGATACACGTTCTGTTGAGCAGAAGCACCTGCCGGATCATAGAAAATATCCTTTTCCTGAATTGGTTTCTTCGGGGCGTCTTGAGGTGCAAACTCTCTGCAATCCGGAAAAGGAACAATTTCGTAAAGTTCTTGAATCGTATCAGCCGAGTTTTGTTTACTTACAAGGAGAGAAGTTAGTGAACGAGGAAGTTGGTCCATTGGTTTGGCAAGGTGTGGAATCATCCACTCCTGAAGATATATCAGAGCTCTTCGGTACCACATTGCCGACGGTTGTTTATTTAGAAATCCCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTATTTTGGAAGAATGCCTTCTCTCAATATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCATGTACACATACATGGGATGCTTTCCACCTTGCACATGCTTCTTTCAAACTTTACTGTGTTCAAAATAATCAAGTACTTACTGATAGCGATATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGGTGAAGAAGAAGAAGAAGACGACGATGATGAAGAAAGTTCCTCCGGCAGTCTTCCTTCTATACAAATTCATGATGATGAAATGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGAGTCATTGCTGAGATGTTTGGAGGATGGACTCAGAACTCTATTAACTATTGAAATACGCGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTTCTTTTTCACGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCCCATATCTCACTTCTAGTATCTGGCAGTGCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTCACGCACAACACAACAACGAAGCAAACAAACAGATTATGTCCGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAATTACCATGAGGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTTGCTTCTTTTGAGAAAGATGACGCAGAGCGCTTACTTTTCTTCTATCAAAGCTCAGAGAAAGACGGATGTGCAAATGACAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAGACCTCCCCCTCCTACAAGAAAGAGATGCGAATTAAGCCAGGGTGCTAGCCATGACATACACAATGAGGTCTTCACAGGGCAGGGTGCTGTAAAAAAAGTAGATGGAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGTACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTTCTGGACCTTCTGAGATAGATAGTTTCGGTGGTGCCCATGTTGAAGCTAATGTGCCACTTGTCCCTATGAAGCGCAGTAGTATTGGAACATCATCTGCGGCCCATAGAAAATCATTTTCAAGCTCAGCTCATTCTAAGCAGGTTATTTCATTGAATCCTTTACCATTGAAGAAACACGGTTGTAGCAGAGGCCCAGTACAGACTTGCTCTGAGGATGAATTTATTAAGGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGAGGGCTTTCCGAGTTCCCTGATGCCATTCTGAATGGAAAGCGCCTTGATCTCTACAACCTATATAAAGAGGTGGTCACAAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGGGAAATTACACATCAACCAATAGAATGACTGGAGTTGGAAATACACTCAAAAGACATTACGAAACATACCTTTTAGAATATGAGTTAGCACACGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGCGGCATATGTGGTGAGTGGGCTCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGCGCGTTTAAGGATTATGCAAAAACAGATGGGTTGGAATATATATGTCCTCATTGTAGTATTACAAATTTCAAGAAAAAACAAGGTGTTGCTAATGGATATTCGCAAGGGTCAATGTCATCAAGACCCCTTTGA 2340 0.4303 MLQFHPQGASKQTCTVLAVTSDTRSVEQKHLPDHRKYPFPELVSSGRLEVQTLCNPEKEQFRKVLESYQPSFVYLQGEKLVNEEVGPLVWQGVESSTPEDISELFGTTLPTVVYLEIPNGESFAEALHLKGIPYVVFWKNAFSQYAACHFRQAFFSVVQSSCTHTWDAFHLAHASFKLYCVQNNQVLTDSDMGPHLLGDCLKINVDPPEIGEEEEEDDDDEESSSGSLPSIQIHDDEMNLRFLICGAPSTVDESLLRCLEDGLRTLLTIEIRGCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSSAHISLLVSGSAQACFNDQLLENHIKNEIIEKSQIVHAQHNNEANKQIMSEPRRSASIACGATIFEITMRLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCANDNIVFSRPPIWLRPPPPTRKRCELSQGASHDIHNEVFTGQGAVKKVDGEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSEIDSFGGAHVEANVPLVPMKRSSIGTSSAAHRKSFSSSAHSKQVISLNPLPLKKHGCSRGPVQTCSEDEFIKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQGVANGYSQGSMSSRPL* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3845 779 SUPERFAMILY FYVE/PHD zinc finger 696 763 IPR011011 -
Psa4g3845 779 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 769 IPR042293 -
Psa4g3845 779 Gene3D - 590 696 IPR036431 GO:0003677
Psa4g3845 779 CDD PHD_ARID4_like 703 754 - -
Psa4g3845 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 759 IPR013083 -
Psa4g3845 779 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 769 - -
Psa4g3845 779 Pfam ARID/BRIGHT DNA binding domain 596 693 IPR001606 GO:0003677
Psa4g3845 779 MobiDBLite consensus disorder prediction 211 230 - -
Psa4g3845 779 CDD ARID 595 693 - -
Psa4g3845 779 SUPERFAMILY ARID-like 593 708 IPR036431 GO:0003677
Psa4g3845 779 SMART bright_3 594 698 IPR001606 GO:0003677
Psa4g3845 779 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Psa4g3845 779 SMART ARID_2 590 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3845 Psa-Chr4 321521455 321540147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3845 4 768 ARID Transcription Factor Family AT3G43240 59.383 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa4g3845 ARID 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3845 - - cam:101514085 1410.59