Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3832 ATGAACAAAATAAAACAACTCCTCGCCAGAATCTCAAACTCCGGCAACAACAACAACAACAAAAAACTCATCCTCACCCTTTTCACAACGGTTCTCATTATAACCGCCATTGTAGCCATTATCGCAACCACAACCACAACCAAAAACTCAAACAAAACCAACAAAATCACTTCATCATCTCTCTCACTCTCTCACCATTCTCACACCATTATCAAATCAGCTTGCACCACCACACTCTACCCCGAACTCTGTTTCTCCGCCATCTCCTCTGAACCAAACATAACTCACAAAATCACCAACCACAAAGACGTTATCTCAGTCTCTCTCAACATCACAAAAAGAGCAGTAGAACATAACTTCTTCACCGTGGAAAATCTTCTCACGTTAAAAAACCTCACCGGGAGAGAGAAAATCGCTCTTCATGATTGTTTAGAAACCATTGATGAAACGCTAGATGAACTCAAAGAAGCTGAGGAAGATCTTGTGTTATATCCAGCTAAAAAGACAGTTTATCAACATGCGGACGATCTCAAAACGCTGATAAGCGCCGCCATTACTAACCAGGTAACTTGCTTGGACGGTTTCTCGCACGACGGTGCTGATAAGAGAGTGAGAAAGGTTCTAGAAGAAGGACAAGTCCACGTGGAGCATATGTGTAGTAATGCATTAGCCATGACGAAGAACATGACGGATTCAGACATAGCAGAATTTGAACAGAAAAACATGTTGAAAAGTGAAAGAAACGGTAGGAAATTATTGGAGGAGGAGAATGGAGTGAAGTGGCCGGAGTGGATATCGGCGGGGGATAGGAGGCTGCTGCAAGGGGGAGCAGTGAAGGCGGATGTGGTGGTCGCGGCGGATGGGAGTGGGAACTTTAAGACGGTGTCGGAGGCGGTGGCGGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTAATTAAGATAAAAAGTGGGGTGTATAAAGAAAACGTGGAGGTGCCAAAGAAGAAGATAAATATAATGTTTTTGGGAGATGGTAAAACTAGCACTATTATTAGTAGTGATAGAAATGTTGTGGATGGAAGCACTACTTTTCACTCTGCTACTGTCGCCATAGTAGGAGCAAATTTTCTAGCAAGAGACATAACATTCCAAAACACAGCTGGTCCAGCAAAGCACCAAGCAGTGGCCCTAAGAGTTGGTGCAGACCTCTCAGCCTTCTACAACTGCGACGTCATAGCCTACCAAGACACACTCTATGTCCACAACAACAGACAATTCTTCGTCAACTGTTTCATTTCCGGAACCGTCGATTTCATCTTCGGCAACGCAGCGGTCGTCTTCCAAAACTGCGACATTCATGCAAGACGTCCAAACTCAGGACAGAAGAACATGGTCACTGCACAAGGAAGGGTTGATCC 1397 0.4438 MNKIKQLLARISNSGNNNNNKKLILTLFTTVLIITAIVAIIATTTTTKNSNKTNKITSSSLSLSHHSHTIIKSACTTTLYPELCFSAISSEPNITHKITNHKDVISVSLNITKRAVEHNFFTVENLLTLKNLTGREKIALHDCLETIDETLDELKEAEEDLVLYPAKKTVYQHADDLKTLISAAITNQVTCLDGFSHDGADKRVRKVLEEGQVHVEHMCSNALAMTKNMTDSDIAEFEQKNMLKSERNGRKLLEEENGVKWPEWISAGDRRLLQGGAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKSGVYKENVEVPKKKINIMFLGDGKTSTIISSDRNVVDGSTTFHSATVAIVGANFLARDITFQNTAGPAKHQAVALRVGADLSAFYNCDVIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNAAVVFQNCDIHARRPNSGQKNMVTAQGRVD 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3832 465 PANTHER PECTINESTERASE 18 465 - -
Psa4g3832 465 SUPERFAMILY Pectin lyase-like 277 464 IPR011050 -
Psa4g3832 465 CDD PMEI-like_3 73 230 - -
Psa4g3832 465 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 230 IPR035513 -
Psa4g3832 465 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Psa4g3832 465 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 230 IPR035513 -
Psa4g3832 465 SMART PMEI_2 66 225 IPR006501 GO:0004857
Psa4g3832 465 Gene3D - 275 465 IPR012334 -
Psa4g3832 465 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Psa4g3832 465 Coils Coil 140 160 - -
Psa4g3832 465 PANTHER PECTINESTERASE 18 465 - -
Psa4g3832 465 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 229 IPR006501 GO:0004857
Psa4g3832 465 Pfam Pectinesterase 281 465 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3832 Psa-Chr4 321120816 321124886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3832 8 465 Carbohydrate Esterase AT3G14310 64.557 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3832 K01051 - pvu:PHAVU_010G123100g 653.284