Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3830 ATGGATACTATCAAATCCTTCAAAGGCTACGGCAAAGTAGACGAAATAGAACAACAAGCATTCAAAAAAAAGACACGTAAGCGCATCACAATCATAATCATCTCCTCCGTCATTCTAATCGCAGTCATCATAGCCGCGGTTGCAGGAATCCTCATACACAAGCGCAACACCTCATCCAACCCCTCACCCAACTCGCTCCCTAACACCGATTTAAACCCTGCCACGTCACTCAAAGCGGTTTGCGATGCAACTCAGTACCCTAACTCGTGCATCGCCGCAATCTCTTCCCTTCCGGAATCAAACACCACCGATCCGGAAAAACTGTTCAAGCTCTCACTCAGAGTCGCCATTGACGAACTCTCGAATCTCACGCGCTTCAGTTCTAAGCTTAAAGCGAGTGGAGACACGCGCCTTGAGAAAGCCATTCGTGTTTGCGGCTCCGTTCTTGAGGACTCGTTGGATCGGCTCAATGACTCAATGTCTTTGATTCTCGGCGATGACAAGATTCTCTCGTCTGCGAAGGTTCGAGATGTTGAAACGTGGCTGAGCGCTGCGTTAACAGATCATGACACATGTTTAGACGCTGTTGGTGAATTGAACTCCACCGCGGCGCGTCGTGTTCTGAACCAAATTGAAACCGCTATGAAAAACTCCACGGAGTTAGCGAGCAACAGTTTGGCGATTGTAACGAAGGTTATACGACTGTTATCGAATTTCGAGGTTCCGAGCCACCACCGGAGGTTGCTAGGGTTTCCGGAGTGGTTAGGAGCGGCTGAGAGGAGGCTTCTCGCGGATACTGTAAACACGACGGCGGATGCGGTGGTGGCGCAGGATGGTTCTGGACAGTATACGACAATAGCGGAAGCGTTGATGATGGTGAAGAAGAAGAGTGATTTGAGATTCGTTGTGTATGTGAAGAAAGGGATATACGTAGAGAACATCGATTTGGATAAGAATACATGGAATGTGATGATCTACGGTGATGGTATGACGGAAACCATCGTAAGCGGTAGCCGGAATTTCATCGACGGCACACCGACCTTTGAAACTGCCACTTTCGCTGTTAAAGGCAAGGGGTTCATTGCCAAGGACATACAATTCGTGAACACTGCAGGTGCATCTAAGCACCAAGCTGTGGCATTTCGATCCGGCTCAGATCAATCTGTGTTCTATAAGTGTTCATTTGTGGGATATCAGGATACTCTTTACGCACATTCAAACCGTCAATTCTACCGGGACTGTGAAATTACAGGTACCATAGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAGAATTGCAAAATCATGCCTAGGCAACCACTATCAAATCAATTCAACACCATAACTGCTCAGGGTAAGAAGGATCCTAATCAAAACTCTGGCATTGTGATCCAGAAATCAACTATCACTCCTTATGACACTCTCACAGCACCAACTTATCTGGGTAGGCCATGGAAAGATTTCTCCACCACTCTTATCATGAAATCAGATATTGGGTCATTCTTGAAACCAGTGGGGTGGATAAGTTGGGTTGCTAATGTGGAACCTCCAAGTAGCATCCTCTATGCCGAATACCAGAACACTGGGCCAGGAGCAGATGTAACCCAGAGAGTCAAATGGGCCGGTTATAAGCCCGCGATCGCAGACGTCGAAGCGTCGAAGTTCACAGTAGAGACCTTTATCCAGGGCTCTGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGATTCTACCTTGTGA 1740 0.4741 MDTIKSFKGYGKVDEIEQQAFKKKTRKRITIIIISSVILIAVIIAAVAGILIHKRNTSSNPSPNSLPNTDLNPATSLKAVCDATQYPNSCIAAISSLPESNTTDPEKLFKLSLRVAIDELSNLTRFSSKLKASGDTRLEKAIRVCGSVLEDSLDRLNDSMSLILGDDKILSSAKVRDVETWLSAALTDHDTCLDAVGELNSTAARRVLNQIETAMKNSTELASNSLAIVTKVIRLLSNFEVPSHHRRLLGFPEWLGAAERRLLADTVNTTADAVVAQDGSGQYTTIAEALMMVKKKSDLRFVVYVKKGIYVENIDLDKNTWNVMIYGDGMTETIVSGSRNFIDGTPTFETATFAVKGKGFIAKDIQFVNTAGASKHQAVAFRSGSDQSVFYKCSFVGYQDTLYAHSNRQFYRDCEITGTIDFIFGNAAVVFQNCKIMPRQPLSNQFNTITAQGKKDPNQNSGIVIQKSTITPYDTLTAPTYLGRPWKDFSTTLIMKSDIGSFLKPVGWISWVANVEPPSSILYAEYQNTGPGADVTQRVKWAGYKPAIADVEASKFTVETFIQGSEWLPNAAVQFDSTL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3830 579 Pfam Plant invertase/pectin methylesterase inhibitor 77 228 IPR006501 GO:0004857
Psa4g3830 579 PANTHER PECTINESTERASE 8 576 - -
Psa4g3830 579 Gene3D - 266 579 IPR012334 -
Psa4g3830 579 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Psa4g3830 579 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Psa4g3830 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 232 IPR035513 -
Psa4g3830 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 231 IPR006501 GO:0004857
Psa4g3830 579 SUPERFAMILY Pectin lyase-like 270 576 IPR011050 -
Psa4g3830 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 232 IPR035513 -
Psa4g3830 579 CDD PMEI-like_3 79 231 - -
Psa4g3830 579 PANTHER PECTINESTERASE 1-RELATED 8 576 - -
Psa4g3830 579 SMART PMEI_2 72 228 IPR006501 GO:0004857
Psa4g3830 579 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3830 Psa-Chr4 321047247 321050575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3830 1 573 Carbohydrate Esterase AT1G53840 59.253 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3830 - - gmx:100784642 858.211