Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3827 ATGGGTGCAACAGCAACACCAGGGTCAAGTGACAGATTGACTGATTCTGATCCAATTGAACTTACAGGAAAAATCATGGTGGTGGCTATAATTTTCCTGTTTGTAGTTGTTATGTTTGTTCTAATGCTTCATTTATATGCTAAGTGGTTCTGGTGGCGTTTTGAGGAGAGAGCATCTCCTCAACCAAGAAACCGCCGTCGCAGACGGCGGTTTCAATTTGCTCCTGGTCAAGATCCTGTCATCTATGGAAGTGGAACTCATCAAATTGGACTTGAAGTTTCAATTCTTAAGTCTTTGCCTGTTTTGGTTTACAAACCTGAAGAATTCAAAGATGATTTGGAATGTGCTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAGCAAGACTTTTACCAAAATGCAATCATGGGTTTCATTTAGAATGTATTGATATGTGGTTTGAATCTCATTCCACTTGTCCTCTTTGTAGGAATATAGTTTCTAATGAATCCTCTAAACCTATTAGTACTTCAAATGCTCAAGAGATCAATGTGTTAGTTTCATCAGAAAGTGAAAATTTGAGTCCTATGAATGGTTTAGAGTCTTCAAATTTTCCAACAAATGTTTTGGTTTTTGGTAATTACCAAACCCAAACCCAAAGACAAGTTAGTTCTATTGGTGTTTCTTTGGAAGAAGGAAGTTTTCATCAACAACAAGAACAACAACCTTGTTTAACATCATCATCATCATCTTCTTTAGCTAGTGATAATACAATGTTGGTGATTGATATACCATTACCAAGTGAATTTGGTTCTTTCTCTTTGTCATCTTCTGATATTAGGTGTGTTGAAGTTGAAGTTGAAGATGAGATGAAATCACCAATGTCAACAAGATTGAGGTCATTTAAGAGGCTTTTAAGTAGGGACAAGAAGTTAAGTCCTTGCGGTCCAAGTTCTATGGATGTTGAACAAGGCCAGAGCTAG 963 0.3686 MGATATPGSSDRLTDSDPIELTGKIMVVAIIFLFVVVMFVLMLHLYAKWFWWRFEERASPQPRNRRRRRRFQFAPGQDPVIYGSGTHQIGLEVSILKSLPVLVYKPEEFKDDLECAVCLCDVVEGEKARLLPKCNHGFHLECIDMWFESHSTCPLCRNIVSNESSKPISTSNAQEINVLVSSESENLSPMNGLESSNFPTNVLVFGNYQTQTQRQVSSIGVSLEEGSFHQQQEQQPCLTSSSSSSLASDNTMLVIDIPLPSEFGSFSLSSSDIRCVEVEVEDEMKSPMSTRLRSFKRLLSRDKKLSPCGPSSMDVEQGQS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3827 320 SMART ring_2 115 156 IPR001841 -
Psa4g3827 320 SUPERFAMILY RING/U-box 95 162 - -
Psa4g3827 320 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 317 IPR044675 -
Psa4g3827 320 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Psa4g3827 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 163 IPR013083 -
Psa4g3827 320 CDD RING-H2_EL5_like 114 157 - -
Psa4g3827 320 PANTHER RING-H2 FINGER PROTEIN ATL3 9 317 - -
Psa4g3827 320 Pfam Ring finger domain 114 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3827 Psa-Chr4 320873423 320877441 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3827 20 303 C3H Transcription Factor Family AT1G53820 41.009 3.92e-57 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3827 - - cam:101491184 349.362