Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3825 ATGGTTACTTTCATTCTTCATTTACAACGGCAGATTGCTTTAGTTCCTCTTGAAGAATCAATTTTGAAGTCTTTGCCTGTTATGGTTTTCAAACCAGAAGAATTCAAAGATGGTTTGGAGTGTACTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAGTTAGAGTTTTACCAAAATGCAATCATGGGTTTCATTTAGAATGTATTGATATGTGGTTTGAATCTCATTCTACTTGTCCTCTTTGTAGGAATGTAGTTTCTAATGAATCCTCTAAACCTAATAGTACTTCAAATGCTCAAGAGATCAATGCGTTAAGTGTGTTAGTGTGTTAG 333 0.3393 MVTFILHLQRQIALVPLEESILKSLPVMVFKPEEFKDGLECTVCLCDVVEGEKVRVLPKCNHGFHLECIDMWFESHSTCPLCRNVVSNESSKPNSTSNAQEINALSVLVC* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3825 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Psa4g3825 110 PANTHER RING-H2 FINGER PROTEIN ATL3 17 100 - -
Psa4g3825 110 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 100 IPR044675 -
Psa4g3825 110 SUPERFAMILY RING/U-box 21 89 - -
Psa4g3825 110 CDD RING-H2_EL5_like 40 83 - -
Psa4g3825 110 ProSiteProfiles Zinc finger RING-type profile. 41 83 IPR001841 -
Psa4g3825 110 SMART ring_2 41 82 IPR001841 -
Psa4g3825 110 Pfam Ring finger domain 40 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3825 Psa-Chr4 320826750 320827344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3825 17 87 C3H Transcription Factor Family AT1G53820 69.014 4.05e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3825 - - cam:101491184 145.206