Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3824 ATGTTTTTCATATTTATGGTTAGTGTAATGTGTCATTTACATGCAATGGGTTTACTTCCTCTTGAAGAATCAATTTTGGAGTCTTTGCCTGTTATGGTTTTCAAACCAGAAGATTTCAAAGATGGTTTGGAGTGTGCTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAGTTAGAGTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTGAATCTCGTTCTACTTGTCCTCTTTGTCGGAATGTAGTTTCTAATGAATCCTCTCAACCTAATAGTATTTCAAATGCTGAAGAGATCAATTTGTTAGCTTCGTCACAAGGTGAAAATTTGAGTCCTCTGAATGGTTTAGGGTTTACAAATGTTTTGGTTTTGGGTAATTATGAAACCCAAACACAAGGTAGTTCTTTTGATGAAGGAAGTTCTCAACAACAACAACAACCTTATTTAACATCATCATCATCATCTTCTTTAGCTAGTGATAATACAATGTTGGTGATTGATATACCAAGGTGA 534 0.339 MFFIFMVSVMCHLHAMGLLPLEESILESLPVMVFKPEDFKDGLECAVCLCDVVEGEKVRVLPKCNHGFHLDCIDMWFESRSTCPLCRNVVSNESSQPNSISNAEEINLLASSQGENLSPLNGLGFTNVLVLGNYETQTQGSSFDEGSSQQQQQPYLTSSSSSSLASDNTMLVIDIPR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3824 177 ProSiteProfiles Zinc finger RING-type profile. 45 87 IPR001841 -
Psa4g3824 177 MobiDBLite consensus disorder prediction 140 162 - -
Psa4g3824 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Psa4g3824 177 SUPERFAMILY RING/U-box 25 93 - -
Psa4g3824 177 CDD RING-H2_EL5_like 44 87 - -
Psa4g3824 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 177 IPR044675 -
Psa4g3824 177 SMART ring_2 45 86 IPR001841 -
Psa4g3824 177 Pfam Ring finger domain 44 87 IPR001841 -
Psa4g3824 177 PANTHER RING-H2 FINGER PROTEIN ATL3 21 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3824 Psa-Chr4 320803708 320804277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3824 3 176 C3H Transcription Factor Family AT1G53820 39.394 6.61e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3824 - - cam:101491184 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3824 4 320803708 320804277 Psa4g3824 4 320803708 320804277 ECH