Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3807 ATGACAAGTTGTTCATTTCCCATTCACAGTTTTGTTCCTGTTGGATTCAGATTCCGTCCTACCGATCAAGAGCTTGTTAACCACTATCTAACTAACAAATTACTCGGCAATGTTTCCGTTGTTAACAATGTTATAGCGGAAGTTGATGTATGCAAGTTCGAACCATGGGAGTTACCAGGTTTTTCTGTTATAAAATCGGATGATCCAGAGTGGTTTTTTCTGTCTCCGCGTGATTATAAATATGCTAACAGTAAGAGGTTTAACCGGGCTACAAAGTATGGATTTTGGAAGGCTACTGGTAATGACAGGAACGTTAAGATTAGGGGTAGTGATAAGGTTATTGGGACTAAGAAGACTCTTGTTTATTATAAAGGTCGTGTTCCTGGTGTTAAGACCAATTGGGTTATTCATGAGTATCATGCTGTCAACTTTGAGGATGTTCAGAGGACTTTTGTTTTATGCCGCTTGATGAAGAAAGCGGAGAAAAAACCCGAAGAGGAAGCTGATATAATGATCTGTGATGAAGGGGAGCCTAGCAGACACATTAGTTCCGACTACTACGAAAATCAAGTAGTAGAAGGAATTCCAGATGTAATAAGCGATCCTTTACCGGAAATGAACATGGAATCGATATTTCAAGAGCCACATCAGGCAGGTAGATACTTTCCCTTCTCAACGCGACAATCTTCAAACTCTGAAAATGAGCGGGAGGTCTCTGTGCCAAACTTCCGATTTCCCGATGCCTATTTTGGAAATGAGAATATCGACTATCAGAGTCCGTTTGAAACTATTGAAGAGGAAGATAAGTTCGTCAACTCAATGTTGATTGACAGGGAATTCATTACTAGTGAAAAACGAAGACAGACTTTTGTCGACGGTTCCATCGAGCCCGAGTCGTTGAGAATGGTCTACTATAAAAGCAGCGAAGCAGATGTTGAAGTAGTCTCTGCAGCGCCGTTACGCAATTTTCTAGATACTTCAACAATGTATCTTGAACATCCTAGTTCGGGCGAATATGTAAGGACTCATGTTCTATCTTTTAACAATGACGAGAGAGACGAACATGAGAGTACCTATTGTGACGATTTTGGGGGAGTGGAGGCATCCTCTTGTGACTCAACTGCTGGTAAACCTTTGGAGATGAGCTGTGTCGAAATTTCTAGTTCTTATTCAACACCAAGAAGAGACAAAAACCAGTATCATCCATCTCCGTGTCACAAATAG 1224 0.4093 MTSCSFPIHSFVPVGFRFRPTDQELVNHYLTNKLLGNVSVVNNVIAEVDVCKFEPWELPGFSVIKSDDPEWFFLSPRDYKYANSKRFNRATKYGFWKATGNDRNVKIRGSDKVIGTKKTLVYYKGRVPGVKTNWVIHEYHAVNFEDVQRTFVLCRLMKKAEKKPEEEADIMICDEGEPSRHISSDYYENQVVEGIPDVISDPLPEMNMESIFQEPHQAGRYFPFSTRQSSNSENEREVSVPNFRFPDAYFGNENIDYQSPFETIEEEDKFVNSMLIDREFITSEKRRQTFVDGSIEPESLRMVYYKSSEADVEVVSAAPLRNFLDTSTMYLEHPSSGEYVRTHVLSFNNDERDEHESTYCDDFGGVEASSCDSTAGKPLEMSCVEISSSYSTPRRDKNQYHPSPCHK* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3807 407 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 12 276 - -
Psa4g3807 407 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 276 - -
Psa4g3807 407 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Psa4g3807 407 MobiDBLite consensus disorder prediction 387 407 - -
Psa4g3807 407 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Psa4g3807 407 ProSiteProfiles NAC domain profile. 12 159 IPR003441 GO:0003677|GO:0006355
Psa4g3807 407 Gene3D NAC domain 21 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3807 Psa-Chr4 319913229 319915801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3807 12 163 NAC Transcription Factor Family AT4G35580 55.346 1.37e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g3807 NAM 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3807 - - mtr:MTR_8g023840 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3807 4 319913229 319915801 Psa4g3807 4 319913229 319915801 ECH