Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3784 ATGATGGTTGTAGATTTGCTTACTTCTGGTCCTACCACAACTGCTATTTCTCAAATCATAGATACCATTGGTGAGTTTCTGTTTTATGCTAGTGATGTGCTTGTGAATAAGGATAGTTTTAAGGAACTTGGTGCTTATTTGGAAAGAATCATGCCGGTTTTGAAAGAATTGGGGAAAGTAAAAGTGAGTGATTCCGAGGCGTTCAACCGTGCTATTGATGTTATGAATCGCGAAACGAAGGATGCGAAGTTACTTGCTCTAGAATGTGGCGAGAAGAGCAAGTTTTATCTGTTGATGAATTGCAGGTCCATTGTAAAGCGGTTAGAGAATCACACAAAGGAGATAAGCAAGGCGCTCGGTCTTCTTCCTTTAGCTGCATCGGGTCTTTCGGCTGGAATATTGGAAGAAATTGAAAAGATTTGTGATAATATGGAGAGAGCTGGGTTTAAGGCTGCGGTAGCGGATGAAGAGATTTTAGAGAAAATCGAGTCAGGGATAAGGGAAAACAATGTCGGTCGTTCTTATGCAAATAATTTAATAACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAGGTCGACAATGAAGGTTGAACTTGAAGAGTTTAAGAAAGAAATCGAAAACGCCCGTGTTGATAAGAAGAAGGCCGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCTTCATCACCGTGCGAAAGGAAACTGAAATACTTTGCGAAACGCCAATCTTTAGGAACTCGGATCTTAGAGCCTTTACAGTCATTTTACTGTCCTATCACACATGATGTTATGATGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAAAAATGGTTCGGAGAAGGAAACAAGCTGTGTCCTTTGACATTGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTACTTTGAAAGAAAAAATACACCAGTTTGGAGATGATGATGAAGTAATGGAATGTCTAAAAACTGTTCAAGATTTGTGTGAGCAGAGAGAGCAACACAGGGAGTGGTTGATGCTTGAAGACTACATACTAGTTCTTATCCAAATTCTCGGTTCGAAAAACCGCGATATAAGGAATCGTGCTTTTGTCATCCTTTGCATTCTAGCAAATGATAATGACGAAGCTAAGGAAAGAATTGTAACGGTTGATGATGCAGTTGAATCGATCGTCCATTCTCTTGGACGACGTCCAGAAGAAAGAAAATTAGCAGTAGCATTACTGCTTGAATTATCCAGAAATGACAGGGCGCGGGAACACATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAACGGAGATGATGACCAAGCTGCTAGAGATGCAACTGAGCTGTTGTATAATCTTTCGTACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCACGCATTTACTGCAGCGTCTCTCCACAGGGCCAGATGATGTAAAGATGATTATGGCCAGAACTTTAGCAGAAATGGAGTTAACTGACCATAATAAAGAGTCTTTATTTGATGGTGGTGTATTGGCTCCTCTTCTTCACCTATTCTTACATTATGATCTTCAGATGAAAAAGGTGGCTACTAAAGCTCTTAGGAATATATCAAGTTTAAAGAGAAATGGACTAGAAATGATTCGACAAGGTGCCGCGCGACCGTTGCTTGACCTCCTTTTCCATCATAGCATACAAACATCAAGTTTATGGGAAGATGTAGCAGGCATAATCATGCAACTTGCTGCCTCAGCTACCTCTCAAGATGCCCAAACACTAGTTTTATTACTAGATTCTGATGATGATGTTTTTAACCTTTTTCCTTTAGTCAGGGTGACACAACCTGGTGTGCAACAAAACATTATTCTGACCTTTTATGTCTTGTGTCAGTCACCTTCATCTTCATATATCAAGACCAAGCTAAATCAGTGCTCGGCTATACCAGAATTGGTTAGACTGTGTGAGAATGAGAATACAAACCTAAGAGCAAGTGCTGTAAAATTGTTTTCATGCTTGGTAGAGAGCTGTGATGAAGCCATCATACTAGAGAATGTTGATAAAAAGTGCATCAATACTTTACTTCGGATCCTAGAATCTTCATCTGATAAAGAGGAAATACTTTCTGCCATGGGAATAATATGCCATCTGCCAGAAATTGATCAAATAACTCAATGGATTCTGGATGCTGGTATACTTCCAATCATTTATAAGTATGTTCACAACGGTAGAGACAGTGATCTTCAAAGGAGTAACTTAGTAGAGGAAGCAATTGGTGCCTTACATCGGTTTACAGTTCCAACTAACTTGGAGTGGCAAAAGGTTGCAGCTGAAACTGGTATTATAACTGTTTTAGTGCAGTTGCTTGGGAGTGGAACAACCTTGACAAAACAACGTGCGGCACTATGTCTCGCTGAATTTTCTAAAAGCACGGTTAGGCTCGGCAAACCTATTCTGAACCGAAAAGGACTACTGTGTTGCTTCTCAGCTCCAAATGAAATTGGCTGCAGAGTTCATGGAGGAATATGCACTGTCAAGTCATCATTCTGCCTGTTGGCAGCTGAAGCAATTGGACCACTCACAAGGAATCTTGGAGAATCTGATTATGGAGTTTGTGGAGCTTCTTTGGACGCTTTATTAACATTAATTGAAGGTGAAAAACTAGAGAGTGGTAGTAAAGTGCTTGCTAAAGCAAATGCAATACCCTTGATAATAAAATTTCTCAGTTCTTCCTCTCCTGAGCTGCAAGAAAAGTCTCTAAATGTTTTGGAAAGGATTTTTCAGCTAGTAGAGTTCAAACAGTTGTATGGATCTTCAGCTCAAATGCCTCTAGTTGACTTAACACAGAGGAGTAATGGTAGAGTTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTTCTTCATGATCAATCTTCATACTTTTGA 3021 0.3946 MMVVDLLTSGPTTTAISQIIDTIGEFLFYASDVLVNKDSFKELGAYLERIMPVLKELGKVKVSDSEAFNRAIDVMNRETKDAKLLALECGEKSKFYLLMNCRSIVKRLENHTKEISKALGLLPLAASGLSAGILEEIEKICDNMERAGFKAAVADEEILEKIESGIRENNVGRSYANNLITLIAEAVGITNERSTMKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPCERKLKYFAKRQSLGTRILEPLQSFYCPITHDVMMEPVETSSDQTFERSAIEKWFGEGNKLCPLTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVMECLKTVQDLCEQREQHREWLMLEDYILVLIQILGSKNRDIRNRAFVILCILANDNDEAKERIVTVDDAVESIVHSLGRRPEERKLAVALLLELSRNDRAREHIGKVQGCILLLVTMSNGDDDQAARDATELLYNLSYSDQNVILMAKANYFTHLLQRLSTGPDDVKMIMARTLAEMELTDHNKESLFDGGVLAPLLHLFLHYDLQMKKVATKALRNISSLKRNGLEMIRQGAARPLLDLLFHHSIQTSSLWEDVAGIIMQLAASATSQDAQTLVLLLDSDDDVFNLFPLVRVTQPGVQQNIILTFYVLCQSPSSSYIKTKLNQCSAIPELVRLCENENTNLRASAVKLFSCLVESCDEAIILENVDKKCINTLLRILESSSDKEEILSAMGIICHLPEIDQITQWILDAGILPIIYKYVHNGRDSDLQRSNLVEEAIGALHRFTVPTNLEWQKVAAETGIITVLVQLLGSGTTLTKQRAALCLAEFSKSTVRLGKPILNRKGLLCCFSAPNEIGCRVHGGICTVKSSFCLLAAEAIGPLTRNLGESDYGVCGASLDALLTLIEGEKLESGSKVLAKANAIPLIIKFLSSSSPELQEKSLNVLERIFQLVEFKQLYGSSAQMPLVDLTQRSNGRVRSMSARVLAHLNVLHDQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3784 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Psa4g3784 1006 CDD RING-Ubox_PUB 263 303 IPR045210 -
Psa4g3784 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Psa4g3784 1006 Coils Coil 193 220 - -
Psa4g3784 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1006 - -
Psa4g3784 1006 SUPERFAMILY RING/U-box 249 331 - -
Psa4g3784 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Psa4g3784 1006 SUPERFAMILY ARM repeat 338 996 IPR016024 -
Psa4g3784 1006 Gene3D - 332 431 IPR011989 -
Psa4g3784 1006 Gene3D - 13 126 IPR036537 GO:0007166
Psa4g3784 1006 Gene3D - 855 1004 IPR011989 -
Psa4g3784 1006 Gene3D - 432 854 IPR011989 -
Psa4g3784 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Psa4g3784 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1006 - -
Psa4g3784 1006 SMART arm_5 750 796 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Psa4g3784 1006 SMART arm_5 707 746 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3784 Psa-Chr4 316951627 316957101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3784 261 1006 U-box Gene Family AT1G76390 27.503 1.78e-62 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3784 - - gmx:100787128 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3784 4 316951627 316957101 Psa4g3784 4 316951627 316957101 ECH
Psa4g3784 4 316951627 316957101 Psa3g0035 3 7471065 7474822 ECH