Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3779 ATGAGGCCGATTTTCGCTGGGAACTTGGAGTACGATACTCGTCAAGCGGACCTTGAACGCTTGTTCTCAAAGTATGGCAGGATTGAACGCGTGGACATGAAATCTGGATTTGCTTTTGTTTACTATGAAGATGAGCGTGACGCTGAAGAAGCAATTCGTGCTCTTGACAACATTCCATTTGGTTATGATAAGCGACGACTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGATCAAAGGCAAACCAGAAGCCCACAAAAACTCTATTTGTGATTAACTTTGACCCGATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAGCCTTATGGACAGCTTCATCATGTTCGAATTCGCCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCCACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTCTCTGTAGAGTATGCTCTGAGGGATGATAGTGAGAGGGTTGACAATTATAGCAGTCCCAGAAGAGGAGGAGGTCTTGCTAGATCTCCCAGTCCAGCCTATCGCAGACGACCAAGTCCTGACTATGGCCGTCCACGTAGTCCTGTGTACGACAGGTATAGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGAATACGGCAGATATCGCAGTCGTTCACCAGTACGAAGGTCGAGAACTTAA 723 0.4703 MRPIFAGNLEYDTRQADLERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGQLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYSSPRRGGGLARSPSPAYRRRPSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPEYGRYRSRSPVRRSRT* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3779 240 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Psa4g3779 240 MobiDBLite consensus disorder prediction 167 240 - -
Psa4g3779 240 Gene3D - 1 84 IPR012677 -
Psa4g3779 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Psa4g3779 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Psa4g3779 240 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 211 IPR029537 GO:0000398|GO:0005681
Psa4g3779 240 MobiDBLite consensus disorder prediction 205 232 - -
Psa4g3779 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Psa4g3779 240 SMART rrm1_1 92 158 IPR000504 GO:0003723
Psa4g3779 240 SMART rrm1_1 3 70 IPR000504 GO:0003723
Psa4g3779 240 Gene3D - 85 172 IPR012677 -
Psa4g3779 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Psa4g3779 240 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3779 Psa-Chr4 316814792 316817914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3779 4 153 Eukaryotic Initiation Factors Gene Family AT4G34110 26.220 2.55e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3779 4 316814792 316817914 Psa4g3779 4 316814792 316817914 ECH