Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3757 ATGGAGAACCACCATTTGAACTTCACACAAAAAGATGACGTGGCAGTAAAAACCGTTACACCCGAGAATTCAGCCGCGAATTCCGGAAACGTCCGTGGCGGAACACGTCATCCGGTTTACCACGGAGTCCGGAAACGGCGGTGGGGAAAATGGGTATCGGAGATTCGAGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGGTCTTTTCCGGCGCCGGAGATGGCTGCGAAGGCTTACGACGTGGCTGCGTACTGTTTGAAAGGGCGTAATGCGCAGCTTAATTTTCCAGATGAAGTGCATCGTCTTCTTCCGTTGCTTCCTCCGCCGTCTTCGTGTACGGCTAGGGATATTCAGGCAGCGGCGGCTAAAGCAGCTCGCATGATGGTTACAAAAGCGGAGAATGGTAGCATTGATTCCGGTGGTGGTGGTGATGATTTTTGGGGGGAGATTGAGTTGCCGGAGCTTGTGAACGGAACGTGGTGGACTTACTCTGTTAATGTTGCGGCGGTGCCGGAGATTGAACTTCCATAG 531 0.533 MENHHLNFTQKDDVAVKTVTPENSAANSGNVRGGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRNAQLNFPDEVHRLLPLLPPPSSCTARDIQAAAAKAARMMVTKAENGSIDSGGGGDDFWGEIELPELVNGTWWTYSVNVAAVPEIELP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3757 176 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 176 - -
Psa4g3757 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 176 - -
Psa4g3757 176 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Psa4g3757 176 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Psa4g3757 176 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3757 Psa-Chr4 315793507 315795130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3757 35 169 AP2-EREBP Transcription Factor Family AT1G01250 65.693 4.85e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g3757 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3757 K09286 - gmx:100802845 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3757 4 315793507 315795130 Psa4g3757 4 315793507 315795130 ECH
Psa3g0045 3 7823640 7824521 Psa4g3757 4 315793507 315795130 PCT