Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3748 ATGAAGATTGAAGTGGGTTTAGGAGGAAATGGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTAGGTGTCAAAGCATTTGATTACTTGGTTACAAAATCAGTTTCTAATGAGAATCTTTTGATGGCTATTGGAAGTGGTGAGAATCTTCAAAACAAGCTTTCTGATCTAGTTGAGAGATCCAACGTTTCGAATTTCAGTTGGAATTATGCAATTTTCTGGCAAATTTCTCAGTCAAAATATGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCAAAGGAAGAAGAAGAAAGAGATTTAGGAATGAAAAGCGTTGTTAGTTTGAATTCTATTGAGGATGAAAAGCAACAAAGGTTAAGGAAAAGGGTGTTGCAGAAGCTTCATACAACATTTGGTGGTTCTGATGAAGACAATTATGCGTTTGGATTGGACCGAGTTACCGATACCGAGATGTTCTTTCTTGCTTCAATGTATTTCTCTTTTGCTAATGGAGATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGCTATGTGATGCATTGAAATCTAGTAGCTCTGATTATTGTGTTAGGTCTTTCTTGGCGAAATCGGTTGGATTTCAAACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAATGGTAGATGAAAGCTTTGAGTTGTTGCAAACTGTTAAATCTGTGTTTTCGACACAATCGTCGCATTCTAGGGTTAAGTCGATTTCATCGTTGGATGGAAAAAGAGGTGAGAATGTGAATGTGAATGAGAATGATAATGAGATTGCCCCTTTTTCTTGTTTGAAAGTCGGCGAGAGTATTAAGAACAATAATAGTAATGGTAATCTTCATCTTCGTCGGAATAGTAATGATAGTAGAGTAGAGGTGATTGGAGTTCCGAAGATTTTCGGGCAGGATTTGAACTCGGCGACACATTTTCGGGAGAAACTTGCAGTTAGGAAAATGGATGAGAGGCCATCATGGGGAGTCCGTCCGAATGGGAATGGAATTAGTTTTCCGAACGGGGTTCATGGTTCGGGTTGGAGAGCTGGTCAAGTCGTGAGGCAGCATGTGCCTGCCGATGTTTTTGCTCCTAGGCCTCCCACAAGTAATGCGCCTGAGCTAGCCAATGGTGGTGGGAGGCATGATTTTGTGCTAAACAACTATCATCAGCAACGAAAGGCGCAGATGCAAATTGATTTCTCCGGAGCCACATCAAGGCCTTCCGTGAGATCGATTGTCGGTGAATCGGAGATTTCTGACGTTGAGGCCTCTTGCAGGGAGGATGCACCGAGTCCCTCCGACGATAGGAGGCCGAGGAAGCGGGGTAGAAAGCCAGCTCATGGAAGAGTAGAACCTCTTAATCACGTGGAGGCAGAGAGACAAAGACGTGAGAAACTAAACCAGCGTTTTTACGCCTTACGAGCTGTTGTACCGAATATCTCCAAGATGGACAAAGCATCTTTATTGGGAGACGCTATCGCCTACATCAACGAACTTCAAGCAAAACTCAAGACAATGGAATCCGAAAGAGAACAACAATTTGCAACCACTTCTAGAGACGGATCATCATCGGCATTACCAACAAACTCTAGACCGGAAAATCATCAAAGCAAAACTCCCGAAATCAACATTCAAGCTACACAAGAAGGCGTCATCGTAAAGGTGAGTTTCCCTATTGATGTTCACCCTATTTCAAAACTCATCCAAGCATTCAAAGACACCGAAATCACTATCCTCGAGTCGAAACTCAACGCTACAAACGACACGGTCTTCCACACATTCATAATCAAGTCCCAAACTTCCGAGCAGCTTACAAAGGAGAAGTTAATCGCAGCATTTTCCAAAGAATCAAACTCCTTATAG 1911 0.4233 MKIEVGLGGNGLWNEDEKAMVVEVLGVKAFDYLVTKSVSNENLLMAIGSGENLQNKLSDLVERSNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPKEEEERDLGMKSVVSLNSIEDEKQQRLRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFANGDGGPGKCFASGKHLWLCDALKSSSSDYCVRSFLAKSVGFQTIVLVPTDLGVVELGSVRMVDESFELLQTVKSVFSTQSSHSRVKSISSLDGKRGENVNVNENDNEIAPFSCLKVGESIKNNNSNGNLHLRRNSNDSRVEVIGVPKIFGQDLNSATHFREKLAVRKMDERPSWGVRPNGNGISFPNGVHGSGWRAGQVVRQHVPADVFAPRPPTSNAPELANGGGRHDFVLNNYHQQRKAQMQIDFSGATSRPSVRSIVGESEISDVEASCREDAPSPSDDRRPRKRGRKPAHGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQQFATTSRDGSSSALPTNSRPENHQSKTPEINIQATQEGVIVKVSFPIDVHPISKLIQAFKDTEITILESKLNATNDTVFHTFIIKSQTSEQLTKEKLIAAFSKESNSL* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3748 636 MobiDBLite consensus disorder prediction 463 477 - -
Psa4g3748 636 Gene3D - 462 530 IPR036638 GO:0046983
Psa4g3748 636 Pfam Helix-loop-helix DNA-binding domain 470 516 IPR011598 GO:0046983
Psa4g3748 636 MobiDBLite consensus disorder prediction 523 557 - -
Psa4g3748 636 MobiDBLite consensus disorder prediction 526 557 - -
Psa4g3748 636 SMART finulus 472 521 IPR011598 GO:0046983
Psa4g3748 636 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Psa4g3748 636 CDD bHLH_AtAIB_like 463 529 - -
Psa4g3748 636 Coils Coil 505 532 - -
Psa4g3748 636 MobiDBLite consensus disorder prediction 415 477 - -
Psa4g3748 636 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 530 IPR036638 GO:0046983
Psa4g3748 636 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 634 - -
Psa4g3748 636 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 245 IPR025610 -
Psa4g3748 636 PANTHER MYC 1 634 IPR045084 GO:0003700|GO:0006355
Psa4g3748 636 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3748 Psa-Chr4 315404846 315408369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3748 9 632 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.352 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g3748 bHLH-MYC_N 9.9e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3748 - - gmx:100807078 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3748 4 315404846 315408369 Psa4g3748 4 315404846 315408369 ECH