Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3746 ATGGATTCAGATAGTACTGTGTCTTCTTTGATCATGATGGATGAAGATTTGCATTCACATCAGTTTTCTTCTTCAACTTCTAAGCTACATACCAATGGTACTCCTACTTCTACTAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCAATGTACCCTCCAATTCACCAGTGTCACAATGGGCATACCCTATGTTCAACTTGTAAGACAAGGGTACACAACAGGTGCCCGACTTGTAGACAGGAGCTCGGCGATATTCGGTGTTTAGCGTTGGAGAAGATAGCGGAATCACTTGAGCTTCCTTGCAGATACACCTCTGTTGGGTGTCCGGAGATATTTCCGTATTACAGCAAACTCAAACACGAGTCTGTTTGTAACTTCAGACCTTACAACTGTCCTTATGCCGGATCAGACTGTTCTAATGTTGGGGATATTTCGCAACTTGTTGCTCATTTAAGGGATGATCATAGAGTTGATATGCATTCTGGGTGCACCTTTAATCATCGTTATGTTAAGTCGAATCCCATGGAAGTGGAAAATGCTACATGGATGTTAACAGTCTTCCACTGTTTTGGACAATATTTCTGTCTCCATTTCGAAGCCTTTCAACTCGGAATGGCCCCAGTTTACATGGCATTCCTTCGTTTCATGGGCGACGAAAGAGACGCCAGAAGCTACAGCTACAGTCTCGAGGTAGGCGGAAGCGGCCGCAAACTAATCTACGAGGGAAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATCGTATACCGAAACATGGCACTTTTCTTCTCTGGCGGCGATAGGAAAGAGTTGAAGTTAAGAGTTACCGGACGGATTTGGAAAGAACAGCAAAACCCTGAAGGTCACAACACATTACACGTCGAGGCAGATAAGAACACATTACATGTTGTCGACTCTGAAAAGAATAGTATACAAGATTTTGGGAATGTAGATAACAAATCTTGTGACAAGGACTCTGTTAGCTCTTTGGATACTGACTTTGTAGATGCTACCCAAATGTTTCATGAAGACAATTATTTGGAGATTGTTGAAGAAACTGCTTTAGACATGGTTCACCAGGATGTGCAGCATGACATGCTTTTCCTACAACACTCGTGGGCAAACATTGAAGATTTGGAAATGATCGCTAACCAAGATAATTTGAATGGCTTCCAAACAATCAAGTCAAAGAAGAAGTCCAAAAGCTTGCTGAGCTTGAGAGGTCTGCTCAATCTCAACTTGATTTGGCCCTGTTCATTGAAGAGCTCTTTTGGAAAGAAAAAAGAAGACAACTTGATTGAGAAGGTCATCCCCGACATGATGAATGAACAATCTAACAACCTTTTGACTGTGTTACCTTCTCAAGAGGAAATTCATAACGCAGTCATGATCCTGGACAAAGACAGTGCCCCAGGTCCGGATGGGTTTGGAGGGTTTTTCTTTGAACATTACTGCGAGATTATTAAGAAAGATGTTATCATGGTTGTCACTCAATTCTTTACTGATGGTTGGATCCTTCCTAATTATAATGCCAACACTTTGGTCTTGATCCCCAAGACTCCTTCTGCTGATGCAATTGAGCACTACAGGCCCATTGCCCTTGCTAATTTCAAGCATAAAATTGTTACAAAGATCATTGCTGACAGGTTATCTCAGATGCTCCCTTCTCTGATCTCTCAAGAGCAAAGAGGCTTCATCCATGGAAGATCTATTAAATAA 1752 0.4195 MDSDSTVSSLIMMDEDLHSHQFSSSTSKLHTNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSVGCPEIFPYYSKLKHESVCNFRPYNCPYAGSDCSNVGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGHNTLHVEADKNTLHVVDSEKNSIQDFGNVDNKSCDKDSVSSLDTDFVDATQMFHEDNYLEIVEETALDMVHQDVQHDMLFLQHSWANIEDLEMIANQDNLNGFQTIKSKKKSKSLLSLRGLLNLNLIWPCSLKSSFGKKKEDNLIEKVIPDMMNEQSNNLLTVLPSQEEIHNAVMILDKDSAPGPDGFGGFFFEHYCEIIKKDVIMVVTQFFTDGWILPNYNANTLVLIPKTPSADAIEHYRPIALANFKHKIVTKIIADRLSQMLPSLISQEQRGFIHGRSIK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3746 583 CDD RING-HC_SIAHs 44 82 - -
Psa4g3746 583 ProSiteProfiles Zinc finger RING-type profile. 46 82 IPR001841 -
Psa4g3746 583 PANTHER UBIQUITIN LIGASE SINAT3 1 300 - -
Psa4g3746 583 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 287 IPR008974 GO:0005515
Psa4g3746 583 CDD Sina 160 288 - -
Psa4g3746 583 SUPERFAMILY TRAF domain-like 99 291 - -
Psa4g3746 583 SUPERFAMILY RING/U-box 40 86 - -
Psa4g3746 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 98 IPR013083 -
Psa4g3746 583 Pfam Seven in absentia protein family 88 287 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa4g3746 583 ProSiteProfiles Zinc finger SIAH-type profile. 99 159 IPR013010 GO:0008270
Psa4g3746 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 154 IPR013083 -
Psa4g3746 583 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 528 582 IPR000477 -
Psa4g3746 583 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3746 Psa-Chr4 315214363 315219127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3746 23 294 C3H Transcription Factor Family AT2G41980 75.000 2.86e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3746 K04506 - gmx:100792687 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3746 4 315214363 315219127 Psa4g3746 4 315214363 315219127 ECH