Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3729 ATGTTAATTAAGCGTACTGCGAAAATTGAAATGCCGAAATTAAAACGGTGTAAATTGGAGGAACCTGATTCCGAAGGTCATGGAGGGTGTTCTGGGATTGAGAAGAAGCCTAAGGTGAACGAGTTTTACTCTTTGGGTGACGCTGAAGATTTCAGCAGTGGTTCAGCTTCTTGGAACAGTGAAATTTCGCATTCTGCATGTGATGGTGGTGGTGAGGTTGAGTTTAATTCGAATTCTGTGTCTCTGAATGGGAAAAAGGTGAAAGAGTGGGGCTCTGGGGAGGCTCGACCTCCGTTATTGCGGTCCTCGCGTGGTCGCCTTCAGACGCTTCCATCGAGGTTCAATGACTCTGTGGTTCTTGAGACATGGAAGGATCGAGGAATGAAAACGGAGGATGGAGATGGAGATTCCAGCTTTGAAGATGATAAGAGTTTTGTTGAGAATGATCAAGTTAAGTGTAGTGACGTGAGTTCTTTGAAAAATTCTTTGAAAAATTCTAAGTGTTTTCCATGTGCTGAAATGAAGGTAGATGAAAGGGAGGGTGGTCAATTGTCTAGTGTGGGTAGAAAGACAATGAAGACTGATAGCAATGCTTCTGGTTCTGGTCTTAGTTTTGAGGAAGCAGAGCAAAAGACTAATAATGGTGGAAAGAGGAGAGAGGTTTATAGGCCAGAAGATTTTGCTCTTGGTGATATTGTTTGGGCCAAATGTGGGAAGAGATATCCGGCTTGGCCTGCTGTGGTGATTGATCCCATCTTAGAGGCTCCTAAATCTGTCTTGAACTGTTGTGTTCCTTTTGCGCTCTGTGTGATGTTTTTCGGTTATTCGAAAAATGGAACTCAAAGGGATTATGCATGGGTGAAACAGGGGATGATATTCCCCTTCTCGGAGTTCATGAACAGATTTCAGGGGCAGACCCAGTTGTTCAAGTGCAAACCAAGTGACTTTCGCATGGCCCTGGAGGAGGCAAAGTTGGCAAAAGATGGTATTCTGGAATCACATTTGCAAGCGGAGGAAGTGACTAATGTAGAAGCTCAACCTGATAGAGTTGAAGAGGTCATGATTTCAAATATTGATCAGGAATACTACTGCCAGGATCAGGATACTAGATGTTGTGACAGCTGTGGTTTGATATTGCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACCACAATTTCATTGCAAACACTGTTCCAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATTCTGATGGTGGGAATTGGGTATGTTGTGATGGTTGCGATGTATGGGTGCATGCTGAGTGTGACAAAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCAATTACTATTGTCCAGATTGCAAGAAAAGTATCAATTGTAAACTACCAGAATCAACAGCATACAAGTCAAAAATCAAATCAGTGGAGTATACCCAAAATGGTGTGGTTCCTGAGAAGTTAATGGTGGTGTGCAATGGAATGGAAGGAATCTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGATTCAAAGAAGCGGACACCCAGTGAATGGGAACGACATACTGGAAGCAGAGCCAAGAAATGGAAATATAGTGTGAAAGTGAAAAGCACGATGCTACCACTTGAAAAATGGATCACGGAGCACATTTCACAAGATGGAGTTCCCCAGGAATTAAATCAGCAGCAGGTGCTTGCTTTTTTGCAAGAGAAGTATGAGCCAATTCGTGCAAAATGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGAAGATAACAAATTTATCATCTGTAACAGGTGCCAAATAGCCGTCCACCAAGAATGCTATGGTGCAAAGCATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTAATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAATATGCGCTTGGTTTCAACGTGAAGTTGTTTTCAAAAACCCTTTGGCCATGGAACCTGCCCTTGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTAATTTGTAAACAAAGTCATGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATTCCAGGGTGAAGAATGGGATTCAAATAACGAAGAAGTTAATTTACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTACTGGTTGCACATTCTTCCCTGGGGATTTTCTCTCCTAGAACTTCGATTCAAAATCACAAGGGACACTTCCGGGGATCAAGGCTTGTTTCATCAAAGAATATAGAGTTCAATGAATGTTCAACCACTGATAATGATAGGGTTGAGCCATTTTCTACTGCCAGATGCCGTGTGCACCGAAGGTCTCAAATTAAGAGAGCTGATGTGCCAATAATTCACTTGCCGAGGGGACCCAGCCTTCATTCTATAAGTGAAATAACTCAATTGAACAATTATAAGGATGCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATCTGCAGAAAACTGAAAAACTTAGAATTTGCTTCGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGTGGTGAGCATGTAAGGCGTAGTATTGCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATCGATGCAACACACAGGGGAAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTGATCAAGGGAGCCGGATTGTTCTTATTGCCAAAACCAATGTTTCTGCCGGTCAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCAGGAAGAATTGAAAGTTCCCTGCCTTTGCAAATCACTCAATTGTAGAAAATTTATGAACTAG 3072 0.4167 MLIKRTAKIEMPKLKRCKLEEPDSEGHGGCSGIEKKPKVNEFYSLGDAEDFSSGSASWNSEISHSACDGGGEVEFNSNSVSLNGKKVKEWGSGEARPPLLRSSRGRLQTLPSRFNDSVVLETWKDRGMKTEDGDGDSSFEDDKSFVENDQVKCSDVSSLKNSLKNSKCFPCAEMKVDEREGGQLSSVGRKTMKTDSNASGSGLSFEEAEQKTNNGGKRREVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPILEAPKSVLNCCVPFALCVMFFGYSKNGTQRDYAWVKQGMIFPFSEFMNRFQGQTQLFKCKPSDFRMALEEAKLAKDGILESHLQAEEVTNVEAQPDRVEEVMISNIDQEYYCQDQDTRCCDSCGLILPCKTMKKVKGSSYAPQFHCKHCSKLRKSKQYCGICKKIWHHSDGGNWVCCDGCDVWVHAECDKISTEHFKDLENTNYYCPDCKKSINCKLPESTAYKSKIKSVEYTQNGVVPEKLMVVCNGMEGIYFPKLHLIMCKCVSCDSKKRTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWITEHISQDGVPQELNQQQVLAFLQEKYEPIRAKWTTERCAVCRWVEDWEDNKFIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPNVERECCLCPVKGGALKPTDVEMLWVHVICAWFQREVVFKNPLAMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSRVKNGIQITKKLIYCAVHRVPSPDSVLVAHSSLGIFSPRTSIQNHKGHFRGSRLVSSKNIEFNECSTTDNDRVEPFSTARCRVHRRSQIKRADVPIIHLPRGPSLHSISEITQLNNYKDAKVFTSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEHVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARILSLGDQGSRIVLIAKTNVSAGQELTYDYLFDPDEQEELKVPCLCKSLNCRKFMN* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3729 1023 CDD PHD_TCF19_like 411 461 - -
Psa4g3729 1023 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1023 - -
Psa4g3729 1023 ProSiteProfiles PWWP domain profile. 229 298 IPR000313 -
Psa4g3729 1023 SMART set_7 881 1004 IPR001214 GO:0005515
Psa4g3729 1023 SUPERFAMILY FYVE/PHD zinc finger 408 468 IPR011011 -
Psa4g3729 1023 SUPERFAMILY SAND domain-like 492 552 IPR010919 -
Psa4g3729 1023 ProSiteProfiles Post-SET domain profile. 1007 1023 IPR003616 -
Psa4g3729 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 762 IPR013083 -
Psa4g3729 1023 Gene3D SET domain 799 1023 IPR046341 -
Psa4g3729 1023 MobiDBLite consensus disorder prediction 187 210 - -
Psa4g3729 1023 ProSiteProfiles Zinc finger PHD-type profile. 408 464 IPR019787 -
Psa4g3729 1023 SUPERFAMILY Tudor/PWWP/MBT 220 349 - -
Psa4g3729 1023 SMART PWWP_4 227 296 IPR000313 -
Psa4g3729 1023 Pfam SET domain 892 997 IPR001214 GO:0005515
Psa4g3729 1023 ProSiteProfiles SET domain profile. 881 998 IPR001214 GO:0005515
Psa4g3729 1023 PANTHER PHD FINGER PROTEINS 1 1023 - -
Psa4g3729 1023 SMART PHD_3 410 462 IPR001965 -
Psa4g3729 1023 SMART PHD_3 594 641 IPR001965 -
Psa4g3729 1023 SMART PHD_3 705 761 IPR001965 -
Psa4g3729 1023 SUPERFAMILY SET domain 874 1020 IPR046341 -
Psa4g3729 1023 Pfam PHD-finger 410 463 IPR019787 -
Psa4g3729 1023 Pfam PHD-zinc-finger like domain 648 760 - -
Psa4g3729 1023 CDD SET_SETD1-like 870 1019 - -
Psa4g3729 1023 SUPERFAMILY FYVE/PHD zinc finger 593 657 IPR011011 -
Psa4g3729 1023 ProSiteProfiles Zinc finger PHD-type profile. 592 643 IPR019787 -
Psa4g3729 1023 Pfam PWWP domain 230 325 IPR000313 -
Psa4g3729 1023 MobiDBLite consensus disorder prediction 180 219 - -
Psa4g3729 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 583 643 IPR013083 -
Psa4g3729 1023 Gene3D - 488 571 IPR010919 -
Psa4g3729 1023 Pfam PHD-finger 607 641 - -
Psa4g3729 1023 CDD PHD_ATX3_4_5_like 594 640 IPR042011 -
Psa4g3729 1023 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1023 IPR025780 -
Psa4g3729 1023 SMART PostSET_3 1007 1023 IPR003616 -
Psa4g3729 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 467 IPR013083 -
Psa4g3729 1023 ProSitePatterns Zinc finger PHD-type signature. 595 640 IPR019786 -
Psa4g3729 1023 Gene3D - 217 334 - -
Psa4g3729 1023 ProSiteProfiles Extended PHD (ePHD) domain profile. 646 761 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3729 Psa-Chr4 313143357 313154488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3729 367 435 EF-hand Containing Proteins AT5G28340 56.522 5.24e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa4g3729 zf-HC5HC2H_2 6.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3729 - - cam:101496041 1695.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3729 4 313143357 313154488 Psa4g3729 4 313143357 313154488 ECH