Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3727 ATGGGTATCTTGAAGTTCCTTTTTTACTTAATCTTTCCTGTCATACATGCCGCCGTTAACAATTGCCCATTTTCCTTATGTGGAAACTTGAGTTTACCTATTCGTTTCCCCTTTCATCTTGAAGGTGAACAATCTCCTTATTGTGGCTATCCCGGTTTCAACTTAATTTGTTCAAATCATAGAAAAACAGTTCTAGAACTTCCTAATTCCGGAGAATTCTATGTTCGCAACATAAACTATCTCACACAACAGATACAACTCTATGATCCTGCTAATTGTCTTCCCAAACGTCTTCTAAGTCTTAATTTTTCAAATTCTCCTTTCATTTCTAGTTTTAGTCGCAACTACACCTTTTTAAGCTGCTCATCTCAGAATATAGGGTCGCAATTCATTCCCATTGATTGTCTTAGTAATTCAACATATTTTGTATCCGCCATTCCTTCGGCGAACTTGGTCAATCCACTTCCTGGTTCTTGCTCTGTTATCAAAAGGCTTTTAGTTCCGGTTGCAAGACAAGAACGGTACGAAGAAAATCTCAGAGATGATCTTAATGCAGATCTTCAATTAGCATGGGATAAACCTGACTGCAGTTATTGTGAATTGAATCAACTAATGTGTGGATTTGAAAGCATTTACAGCAGTCAAGTTGTCTGTATCACTGATTACCAAGCAGGTACATCGCGACAAGGACTTAAAGTTTTCAGAATCATAGCACTATGTGTTACTGGACCAGCTCTAATCTTTGTTATATTAATGGCAAGTTGTGTATGCTACAATGACAGAATAGCAAACATTACCAGAAACGCAGCTTCTCGGTCTGCACCAGCTGCAATAGCACCACAACCTGAAATCATAGTAACTACAGGATTAGATGAATCCACTATTGAATCTTATGAGAAAGTGGTTCTTGGCGAGAGTCGACGTGTTCCTGGACCAAACGATGGATGTTGTTGGATATGCTTGTCGGAGTACAATAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAGCATTGTTTCCATGCTGATTGCATCGATGAATGGCTTCGGATTAATATTACGTGTCCTGTTTGTCGAAACTCCCCTGCTCCTTCTCCTCTTAATGTTGCTTCTAGTAATCTTTGA 1125 0.3893 MGILKFLFYLIFPVIHAAVNNCPFSLCGNLSLPIRFPFHLEGEQSPYCGYPGFNLICSNHRKTVLELPNSGEFYVRNINYLTQQIQLYDPANCLPKRLLSLNFSNSPFISSFSRNYTFLSCSSQNIGSQFIPIDCLSNSTYFVSAIPSANLVNPLPGSCSVIKRLLVPVARQERYEENLRDDLNADLQLAWDKPDCSYCELNQLMCGFESIYSSQVVCITDYQAGTSRQGLKVFRIIALCVTGPALIFVILMASCVCYNDRIANITRNAASRSAPAAIAPQPEIIVTTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETVRCIPECKHCFHADCIDEWLRINITCPVCRNSPAPSPLNVASSNL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3727 374 Pfam Wall-associated receptor kinase C-terminal 156 220 IPR032872 -
Psa4g3727 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Psa4g3727 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 368 - -
Psa4g3727 374 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 368 - -
Psa4g3727 374 SUPERFAMILY RING/U-box 310 362 - -
Psa4g3727 374 Pfam Ring finger domain 317 359 IPR001841 -
Psa4g3727 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Psa4g3727 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 364 IPR013083 -
Psa4g3727 374 SMART ring_2 317 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3727 Psa-Chr4 313112762 313114452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3727 20 365 C3H Transcription Factor Family AT2G46495 46.893 7.21e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3727 - - gmx:100798415 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3727 4 313112762 313114452 Psa4g3727 4 313112762 313114452 ECH
Psa3g0061 3 8753590 8754902 Psa4g3727 4 313112762 313114452 PCT