Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3704 ATGACTGCAAATAATGGTAGAGGAAGTGATGAACATAAGAGAAAAAGCAATGTGGTTATTGGTAATGAGAATAATGGTTTGACTAGAAATTTTGCTTCTTTAGTTGGATCTGGACATCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAAAATTGCATGTTAGGAAGTATCATAATAGCTTTAGTAGAGAAGTTGCATTGAAAAAAGTTGAAGAACAGATACCTCTCAGGTTAAGCAAAAGACAAAAGGGAAGTGATTCTAGGATAAACTTAAATCATGAACCATGTAAAATGAAAAGTGCTTCATCTACATCTAGTTATCCTCAAAAGGGAAAGGGAGTTCTTCAGAAAATGTCTGGCGCAGAATGTTTTAACGACGGAATCGTGTTGAGAGTGTGGATGAAGTCTGAAAGTTGTAGAATGAAGAAACCAGAAAGGTTGTATATATTTAAACAGATCTTGGAGTTGGTTGATTTTGCACACTCTCAAGGGTTTGTCTTGCAGGAGATAAAACCATCTTGTTTTACGTTATCGCCTTCGAATAAGATTAAATACATTGGTTCGTATAGCGAACAAGTTTTTGATGACAGAAAATCGTGTTTCACCGTGTTTAAGTCGTGTCTTAAGGCCATCGTGACTTGTAAAGAGACAGAATCTCTTAAGCAGCAGCAGCATCATTTCAAAGAAAAGATGTGTCTAGATGGTTCCAGTTATCAACATGCTTTTGCAGAAGAAAAGCAGTTTGTTTCTGAAACCATACAGTTAGAAGAGAAGTGGTACACTAGTCCAGAATCGGTCGATGATGGAACTTGCACTTTTTCTTCAAATGTTTATAGCCTCGGAGTTCTTCTCTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCATCTGTGATGTTTGATATGCGTCATCGAATCTTACCGCCGAAGTTTCTATCACAAAATGCAAAGGAAGCTGGTTTTTGTCTATGGCTTCTGCACCCTGAACCTTCTTCTCGTCCTAATACAAGGATGATTTTAGAATCTGAGTTTATACGCGAATTAGAGGAATCGAGTTCCGGAGATAATGTTATAGTAACGGAAGGCGATGTAGCTGACACTGAGGAGTTACTGAATTTTCTAATTTCGGTTGAAGAAGAAAAGAAAAAACATGAAACCAAATTGACAGAAGAGTTAAATTTTTTGAATGAAGATATTAAGGAGGTAGAAAGAAATCATACATATGAGACTGATTCAGTATTTCCTTTGGCACAATTGAGCTATCGAAACTTTCAAAATTCTTCCACAGATATCGGTCGATCTATTCCAAGGTCATTCCCCGACGAAGCAAGGTTTATGAGTACTATAAGTCAGCTAGAGAATAGTTACTTTTCCATGAGATTCCAAGGCCTGCTCAAGGAGGCTGCAACTGTTAAAACCAGCGATAAAACCGTGATGGAAAGTAGATGGCGATTGCCTCATTTAGAGAATGTTAGTAGTAATGATCCGAAGAGAATTCAAGGCTCTATCGGTTGTTTAGGACCTTTCTTTGATGGTTTATGCAAATTCGCTCGTTACAGTAAGTTTGAAGAGCGCGGAACATTGAGAAATAGTGATCTTCTTAGTTCTGCCAATGTGATATGTGCCTTGAGTTTTGACCGCGACGAGGACTACATAGCGGCCGGTGGGATTTCGAAGAAGATAAAGATATTTGACCTCAATGCTACTTCGAGCGATTCTATAGACATTCAGTACCCCGTTGTCGAGATGTCAAATAAATCAAAGCTTAGTTGCGTGTGCTGGAACAGTTATATAAAAAACCATCTCGCTTCTACGGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACCGGTCAGCCACTGTCTCAATACATGGAGCACCAGAAGAGAACTTGGTCTGTTCACTTTTCGGTGTCCGATCCAAAAATGTTTGCTAGTGGAAGCGACGATTGTTCTGTTAAACTGTGGAATATCAGCGAGAGAAATTCTATAGGAACCATATTGAGTCCTGCAAATGTATGTTGTGTTCAGTTCTCTGAATACTCATCGAATCTATTGTTTTTCGGATCGGCTGATTACAAGGTCTACGGTTATGATCTTCGTCACACTAAAATCCCTTGGTGTACATTATCTGGTCATGGAAAAGCTGTTAGCTATGTAAAATTTATCGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACACTTTGAAGCTATGGGACCTGAAGAAAACTAGCTCAGCTGAATTAGCATCTGATTCTTGTGACTTAACCTTTAGAGGTCATAGTAATGAAAAGAATTTCGTTGGTTTATCGGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCAGTGCCGATTGCATCTCACAAATTCGAGTCAATCGATCCTATTTCCGGCCATTCAAATAGTTGTGACAACACCGGACAATTCGTTTCTAGCGTCTGCTGGAGAAAGAAGTCTAACATGCTAGTCGCAGCCAACTCAGTTGGAATCGTGAAACTACTGCAGATGGTGTGA 2577 0.3915 MTANNGRGSDEHKRKSNVVIGNENNGLTRNFASLVGSGHPSTSFCSTTDPKHIVEKLHVRKYHNSFSREVALKKVEEQIPLRLSKRQKGSDSRINLNHEPCKMKSASSTSSYPQKGKGVLQKMSGAECFNDGIVLRVWMKSESCRMKKPERLYIFKQILELVDFAHSQGFVLQEIKPSCFTLSPSNKIKYIGSYSEQVFDDRKSCFTVFKSCLKAIVTCKETESLKQQQHHFKEKMCLDGSSYQHAFAEEKQFVSETIQLEEKWYTSPESVDDGTCTFSSNVYSLGVLLFELLCNIESLEAHSSVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTRMILESEFIRELEESSSGDNVIVTEGDVADTEELLNFLISVEEEKKKHETKLTEELNFLNEDIKEVERNHTYETDSVFPLAQLSYRNFQNSSTDIGRSIPRSFPDEARFMSTISQLENSYFSMRFQGLLKEAATVKTSDKTVMESRWRLPHLENVSSNDPKRIQGSIGCLGPFFDGLCKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNATSSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRTWSVHFSVSDPKMFASGSDDCSVKLWNISERNSIGTILSPANVCCVQFSEYSSNLLFFGSADYKVYGYDLRHTKIPWCTLSGHGKAVSYVKFIDAQTVVSASTDNTLKLWDLKKTSSAELASDSCDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHKFESIDPISGHSNSCDNTGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3704 858 PANTHER LIGASE COP1, PUTATIVE-RELATED 17 65 - -
Psa4g3704 858 PANTHER LIGASE COP1, PUTATIVE-RELATED 128 226 - -
Psa4g3704 858 PANTHER LIGASE COP1, PUTATIVE-RELATED 61 99 - -
Psa4g3704 858 PANTHER LIGASE COP1, PUTATIVE-RELATED 211 858 - -
Psa4g3704 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 632 674 IPR001680 GO:0005515
Psa4g3704 858 Gene3D - 517 858 IPR015943 GO:0005515
Psa4g3704 858 SUPERFAMILY WD40 repeat-like 545 855 IPR036322 GO:0005515
Psa4g3704 858 ProSiteProfiles Trp-Asp (WD) repeats profile. 718 758 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 625 665 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 583 622 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 537 572 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 760 799 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 711 749 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 668 707 IPR001680 GO:0005515
Psa4g3704 858 SMART WD40_4 810 856 IPR001680 GO:0005515
Psa4g3704 858 Gene3D Transferase(Phosphotransferase) domain 1 134 363 - -
Psa4g3704 858 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 718 751 - -
Psa4g3704 858 PRINTS G protein beta WD-40 repeat signature 609 623 IPR020472 -
Psa4g3704 858 PRINTS G protein beta WD-40 repeat signature 652 666 IPR020472 -
Psa4g3704 858 PRINTS G protein beta WD-40 repeat signature 736 750 IPR020472 -
Psa4g3704 858 ProSitePatterns Trp-Asp (WD) repeats signature. 736 750 IPR019775 -
Psa4g3704 858 SUPERFAMILY Protein kinase-like (PK-like) 135 353 IPR011009 -
Psa4g3704 858 Coils Coil 392 412 - -
Psa4g3704 858 Pfam WD domain, G-beta repeat 717 749 IPR001680 GO:0005515
Psa4g3704 858 Pfam WD domain, G-beta repeat 628 665 IPR001680 GO:0005515
Psa4g3704 858 ProSiteProfiles Protein kinase domain profile. 29 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3704 858 SMART serkin_6 51 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3704 858 PANTHER PROTEIN SPA1-RELATED 2 61 99 IPR044630 GO:0009640
Psa4g3704 858 PANTHER PROTEIN SPA1-RELATED 2 17 65 IPR044630 GO:0009640
Psa4g3704 858 PANTHER PROTEIN SPA1-RELATED 2 128 226 IPR044630 GO:0009640
Psa4g3704 858 PANTHER PROTEIN SPA1-RELATED 2 211 858 IPR044630 GO:0009640
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3704 Psa-Chr4 310668963 310671980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3704 629 798 Miscellaneous Gene Families AT5G08390 25.000 4.03e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Psa4g3704 WD40 0.0093 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3704 K16240 - gmx:100802144 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3704 4 310668963 310671980 Psa4g3704 4 310668963 310671980 ECH