LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g3702	ATGTGGAGTTTCTATTTCTTCTTATTATGCATCTTGTTCATCTTCTTAACCTCTTTTACACCATCTTATTCTTATCAACCTAGAAGATTCCTTCATCAACCTTTTAATCCACAAAACTCACTCTCACCTTCTCAACCACCAAACCCTTCACCTTCTCCATCGCCACCGCCACCACCACCGCCAAATACTAAATATCCATTTTCCACAAATACCCCTAATGCTTCTTCTTCTTCTTCTACACCCTTTTTCCCAACATACCCTTCACCACCACCACCAACTTCACCTTCTACTTACGCTACTTTCCCTGCAAATATCTCCTCTCTTATCTTTCCTCAACCCCCTAAACCCAACTCATCTTCTTCCAAACTCCTCGTCGTCGCCATTGCCTCCGTTTTCGCCGCTCTCGCTGTTGTCGTCGTCTCCGCTTTTATATACTGCCGCAGACGCCGGAAGAGATTCTCCGGAGATGATAAAACACTCAGATCCGATAGTAGTATACGTCTATTCCCTCGCGACGGTGCTGCTGTTGTGGCGAAATCGAGAAACGTTTCTTCTACTAGCTCCGAGTTTCTTTATCTTGGTACCATTGTTAACTCTCGTGGTGATGATCTACCTGATTCTCGTCGGAATACTCGGAAAATGGACTCGCCGGAGCTTCAGCCTTTACCGCCGCTTGCACGACAAGGCTCGAGGGTTTACGATGGAGGTGCTGCTCCGGTGGGGGAAGGTGAAGATGAGGAAGAGGAGTTTTACTCGCCGAGAGGCTCTTTGAATGGAAATGGATCAGGTTCTCGGAGAATCTTCGCCGGGATTTCAGCTGAGAATTTGGTGGGTCGAAGTAGCAATGAATCTACCACTTCTTCTTCGTATTCATCTTCTTCTGCTTCACCTGATCGTTCTCACTCTATTAGTCTCTCGCCGCCGGTTAGTTTAAGTCCAAGAAGATCACAATCGAAGTCGCCGGAAAATGTACTTTCACAGCCACCGACACAGACAATTCACTGTAGTGACGGTGGAAGAAGCTCGGTGTCTTCATCACAAGCTTCTTCGAACCGAAACGCGAGGTCTGCTTCTTCAATGTCTTCAACGCCGGAAAAAATCTTTGCCGGAGAATGTCAATCACCGTCTTTATCACCTCTTAACCTTTCACCGACGAAAAACTCTAATGGGACTGTTGTTAATCTCGTAAAGACTGAATCTTGTAACGGAGATGCTTCTTCACCAAGGTTATCAAATGCTTCTAGTGGTAAATCTTCGTCTTCGGCGTTTACTCTACCGTCGCCGGAGAAAGTTGCAATGATGCATCATCATAACAATCATGGGTTGGATCAGTCTCCAACAATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTCTCTCATCATTGCCACTTTCACCGACACTTCTTTCATCACCAGAGAGAGAGATGAACACCATGAACACTCGACCACCACCGCCGCCGCCTCCACCTTCTAGGAAGCATTGGGAGATTCCGGACCTCTTAACACCAATTGTTGAATCACCAAGTGTTTTGATTCAACATGGTGCTGCATCTCAAAGAAAACAATGGGAAATACCAGTTCTTTCAACACCAATTGTACCTTCTGTTAAAGTTTCAGCCCCACCTCCACCACCTCCACCACCACCACCGACAATGTCAATGCGACAAAGGAAGCAATGGGAAGTACCTTCTCCAACAACCCCTGTCGGTCAACCGGTGGTTTGTAGGCCGCCGGAACTGAAACCTCCTTCAAGGCCTTTTGTGTTGCAAACCCCTTCAAATACATTGGTTTCTCCCGTCGAATTGCCACCTAGTTTTGAGGAGAATGCAGAAGAGGTTTTGAAACCGAAGTTGAAGCCTTTGCATTGGGATAAAGTGAGGGCTAGTTCTGATCGTGAAATGGTTTGGGATCATTTGAGGTCCAGCTCTTTTAAGTTGAATGAAGAAATGATTGAAACATTGTTTGTGGTGAACACGCCAAATCCAAAACCAAAGGATGCTACTCCACGTTCAGTTCTTGCACCTCAAAATCATGAGGATAGGGTGTTGGATCCTAAAAAGTCTCAAAATATTTCTATCTTACTTCGAGCGGTTAACGTTACGGTAGAGGAAGTGTGTGAAGCACTGTTAGAAGGTGTTACTGATACACTTAATACCGACCTACTCGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAACGCAAATTGAAGGAATATAAAGACGACACTCCAAACAAACTTGGTCCTGCTGAGAAGTTTTTGAAGGCAGTGCTTGATGTACCTTTCGCATTTAAAAGGGTCGAAGCTATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTCGGAAATCGTTTCAAACTCTAGAGGTTGCGTGTGAAGAGCTGCGGAACAGTAGAATGTTCTTGAAGCTACTAGAAGCTGTGCTAAAAACCGGAAACCGCATGAATGTTGGAACAAACCGAGGTGATGCGCATGCGTTCAAGCTCGATACACTTCTAAAGCTGGTTGATGTCAAAGGCGCAGACGGAAAAACAACTCTTCTGCACTTTGTTGTACAAGAAATCATTAGAACCGAAGGAGCTCGTCATTCGGATACTACTACAACTACTGCTAGTACTAGTATTACTAATCAAACTCCAAGCACAACATTAAGCGACGACGCCAAGTGTAGGAGGCTTGGTCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCGAATGTTAAGAAGGCCGCGGCAATGGACTCAGAAGTTCTCACGAGCGAAGTCTCTAAACTTTCAAAAGGAATCAAACACATTACCGAGATCGTGAAATTGAATCAAACAGCAGGATCCGACGAAAATGTTCGTAAATTCACAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAAGAGATTGTGAGAATTCAAGCACAGGAAAGTGTTGCATTATCACTAGTGAAAGAGATCACAGAGTATTTTCATGGAAACTTATCGAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGATTTCTTAACAGTTCTTGATAGAGTATGCAAAGAAGTTGGTAATATAAATGAAAGGACCATGATTAGTTCAGCTCATAGATTTCCTGTCCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGTTTACATGGAAGGAAACATTACAGCTCCTCAGATGATGACAATCCATCGCCGTAG	3216	0.4415	MWSFYFFLLCILFIFLTSFTPSYSYQPRRFLHQPFNPQNSLSPSQPPNPSPSPSPPPPPPPNTKYPFSTNTPNASSSSSTPFFPTYPSPPPPTSPSTYATFPANISSLIFPQPPKPNSSSSKLLVVAIASVFAALAVVVVSAFIYCRRRRKRFSGDDKTLRSDSSIRLFPRDGAAVVAKSRNVSSTSSEFLYLGTIVNSRGDDLPDSRRNTRKMDSPELQPLPPLARQGSRVYDGGAAPVGEGEDEEEEFYSPRGSLNGNGSGSRRIFAGISAENLVGRSSNESTTSSSYSSSSASPDRSHSISLSPPVSLSPRRSQSKSPENVLSQPPTQTIHCSDGGRSSVSSSQASSNRNARSASSMSSTPEKIFAGECQSPSLSPLNLSPTKNSNGTVVNLVKTESCNGDASSPRLSNASSGKSSSSAFTLPSPEKVAMMHHHNNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPEREMNTMNTRPPPPPPPPSRKHWEIPDLLTPIVESPSVLIQHGAASQRKQWEIPVLSTPIVPSVKVSAPPPPPPPPPPTMSMRQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVLQTPSNTLVSPVELPPSFEENAEEVLKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLAPQNHEDRVLDPKKSQNISILLRAVNVTVEEVCEALLEGVTDTLNTDLLESLLKMAPSKEEERKLKEYKDDTPNKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTTTASTSITNQTPSTTLSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGIKHITEIVKLNQTAGSDENVRKFTESMNKFMRMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGNINERTMISSAHRFPVPVNPMLPQPLPGLHGRKHYSSSDDDNPSP*	1072

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	40	66	-	-
	Psa4g3702	1071	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	542	1031	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	538	554	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	459	493	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	278	430	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	239	258	-	-
	Psa4g3702	1071	PANTHER	FORMIN-LIKE PROTEIN 1	6	1071	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	278	426	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	459	479	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	202	232	-	-
	Psa4g3702	1071	Gene3D	Formin, FH2 domain	607	1028	IPR042201	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	38	71	-	-
	Psa4g3702	1071	MobiDBLite	consensus disorder prediction	538	558	-	-
	Psa4g3702	1071	SMART	it6_source	609	1033	IPR015425	-
	Psa4g3702	1071	PANTHER	FORMIN-RELATED	6	1071	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Psa4g3702	1071	Pfam	Formin Homology 2 Domain	616	1018	IPR015425	-
	Psa4g3702	1071	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	609	1044	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g3702	Psa-Chr4	310649369	310653960	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g3702	72	328	FH2 protein (formin) Gene Family	AT3G25500	44.604	1.73e-27	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g3702	-		-	gmx:100800333	1233.01