Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3694 ATGAGCAAACTAGAGAGTAAGCCAAGTGAATATAGAAGTATTGATGATTCTCAACTGTCCAAAAGAAGCACTGAGGGATCCCATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGTTGAACTCAATAATTCTCTTAATATGTCACAATCTTCTAGATTTGACTATACCAAACCGTATATGGTGGGAGGCACAAAACCAAAGCCACGCGAAGAGAAGTACATATTACGAGTTGCATTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGTTGTTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAAAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCACGGTCTTGGGAAAACAGTTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCATGGAGGTCCCCAAGCAGCCACTGGTTGATAAAGATGACGTAGAAAAAGAAACTTATGAAGATCATGCTATGCCGAGTAAGAAAAGGAAATGCCCTCCTAGTTCAAAAAGCGGCAAGAAGAAGGCTTTGGACAACATGATGCTTGAAGATGTTGCACGCCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGAGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAAAATTCAATTGATGATCTCTACAATTATGATCCTTATGCTGTGTACACATCATTCTGTTTAACAATCAAGATTCCTATCAACAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAAATATCTTAAAGACGATCATGTTACATCGGACAAAAGGCTCACTTCTTGATGAGGAGCCTATTATATCTTTGCCACCTAAATCTATGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGAGATTTCTATTCCAAGCTAGAGGCCGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGCTCCGGTTTGGGCAGTGATGATTTAGATGATGACTTTGGGGACTTTAAGGATGCTTCACCTGAAACCACATTGACCCAGGAATCTGCACAAAATATTGTTCATGCTGATGTTACTGGGCTCTCCAACTTAACACCGCCACCAGTTGAGCAGAATGTGGGTCAGCAGCAAACAGAATTGCCGGCATATTTGATGACCTTGCATCAAACACAACCAAAGCCCTGCGAAAATCAAACCAAACCGTTGTCAGTAGATGGTGATGATGCTGGGGATTGTACTGCTGCAGCTGCACGTTCTGTACCACCATCTCTACAGGAAGATCATATCAAGGATATCAGCGGGTCTATTGTTGCACAGGGGAACCCAATATTAGGAGTCCATATCTTCTTATATTCGAAGGATGTATCTGAGATAAAATGTTTGCAAGGTTCTGTTCATGGTCCACGACAAGAAGCAGCTCTGTGTCATGCTGTAACAGATGCGGATGAAAAGTTCTCATTCAATTCAATACCTTGTGGAAGTTATGAACTAGTTCCCTACTACAAGGATGCTATGATAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGATAAACGTCCACGGATGGAAGGGCAGTTTGTTCGCCAAGTACAAAGTGAACTTGCGGTCTGGTGAAATCTGTTTGATTTTAATACCTCTGTTAGTGTTTTCTGTCAGCTTGTTATATTGTACCGATGAGGAAAGGCAACTATTGAATCATTCAAATGCTTCTCTTTTTTTCTCGTGTGATGGAAAAAACCAAAAAGAGGATAGTAACACCAATCTGGTGATTGGTCAGTCTGTACAAGTTGATGCAAAATTTCTTAACAGTCAACATGAATTCTTTCCAGCCACCACCAAAGGTTCATCTAAAAGGAAGCAGAGCTCAAACCACCAATTGAATGTGTTGTTTTTCGTATTCAAATCATGCAACAAGATTTGTAGTTCGACAAGGTCAAAATTTCCAAGTTCACAAAGAGGACAGGTTGATAAGGCCTGGCTTGCTCTTTCAAACCTACAAATATCTAGCAGGGATTATGTCAAACCCGGAAAACATGTTAAAGTTACCCCTCAGTTTCACAACGACGGGACAACAACGTCCTTCCAAGGAAACTATGAGAATGACACACTTAACTGTTTCAATGTCACAACAACTCCAACTGTCATTAATCATACCTCTCAGGTTTTAGATTGCTCAATGAACAATCACACAAAGTACACTAGCCAACCCAAAGAGTCTACAAAATTTGTAGCTGATAATATTAATGTTGATGACGATGACATATTCGAGAGCATTGATGTGGACCAAATTGTTGAGAAATACCAGTCCTCATGCACTCCTCAACCCCGATGTCAAAGTTTCCCTCTATTGCACCAATTCCAGTTCTGTGCAGATAGAAAAGCTTCGCCAAGACAGATTGGTTACCGGACCGGACTTGCAAAGGGAATTGGATTAGGTGCTACATACTTTGTTGTCTTCTGCTGTTACGCACTTTTGTTATGGTATGAAGGTTATTTGGTTAGGCATCACTACACCAATGGAGGACTTGCAATTGCTACAATGTTTGCTGTTATGATCGGTGGATTGGCTTTAGGCCAGTCTGCACCAAGCATGGCCACATTTACAAAGGCCAGAGTTGCTGTTACCCTTGATAATGCTACTGGACTCATGTTTGCTCCATCTTATATTGATGTTGCGATTAAAAGTCCATTGTTGAATGTTGAATTTCCGCAGGCTCTGGTCAATGTCCGTGGTGCTGTGGTCTGCAAGGAAGAATGCGATCCATCTGTATCTGTGACTATTGTGAGGAAGGTTGCTAAACATGATGAAGCTAGAAAGCTTGACCTCCGATAG 2982 0.4185 MSKLESKPSEYRSIDDSQLSKRSTEGSHDEDDCDVCIIEDISHPAPTSRSVELNNSLNMSQSSRFDYTKPYMVGGTKPKPREEKYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDHGLGKTVRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDVEKETYEDHAMPSKKRKCPPSSKSGKKKALDNMMLEDVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWSLRAKRRWCLSGTPIQNSIDDLYNYDPYAVYTSFCLTIKIPINRNPSKGYRKLQNILKTIMLHRTKGSLLDEEPIISLPPKSMELKKVEFSQEERDFYSKLEADSRAQFQEYADAGSGLGSDDLDDDFGDFKDASPETTLTQESAQNIVHADVTGLSNLTPPPVEQNVGQQQTELPAYLMTLHQTQPKPCENQTKPLSVDGDDAGDCTAAAARSVPPSLQEDHIKDISGSIVAQGNPILGVHIFLYSKDVSEIKCLQGSVHGPRQEAALCHAVTDADEKFSFNSIPCGSYELVPYYKDAMIKRSDMKAGKDRQINVHGWKGSLFAKYKVNLRSGEICLILIPLLVFSVSLLYCTDEERQLLNHSNASLFFSCDGKNQKEDSNTNLVIGQSVQVDAKFLNSQHEFFPATTKGSSKRKQSSNHQLNVLFFVFKSCNKICSSTRSKFPSSQRGQVDKAWLALSNLQISSRDYVKPGKHVKVTPQFHNDGTTTSFQGNYENDTLNCFNVTTTPTVINHTSQVLDCSMNNHTKYTSQPKESTKFVADNINVDDDDIFESIDVDQIVEKYQSSCTPQPRCQSFPLLHQFQFCADRKASPRQIGYRTGLAKGIGLGATYFVVFCCYALLLWYEGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMATFTKARVAVTLDNATGLMFAPSYIDVAIKSPLLNVEFPQALVNVRGAVVCKEECDPSVSVTIVRKVAKHDEARKLDLR* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3694 993 MobiDBLite consensus disorder prediction 185 211 - -
Psa4g3694 993 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 847 919 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g3694 993 PANTHER BNAA01G36010D PROTEIN 148 369 - -
Psa4g3694 993 PANTHER BNAA01G36010D PROTEIN 57 150 - -
Psa4g3694 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 325 IPR027417 -
Psa4g3694 993 SUPERFAMILY ABC transporter transmembrane region 845 924 IPR036640 GO:0005524|GO:0016021
Psa4g3694 993 SMART ultradead3 108 294 IPR014001 -
Psa4g3694 993 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 148 369 - -
Psa4g3694 993 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 57 150 - -
Psa4g3694 993 Pfam SNF2-related domain 153 361 IPR000330 GO:0005524|GO:0140658
Psa4g3694 993 Gene3D - 177 331 IPR038718 -
Psa4g3694 993 MobiDBLite consensus disorder prediction 1 31 - -
Psa4g3694 993 Gene3D - 82 173 IPR038718 -
Psa4g3694 993 CDD DEXDc_SHPRH-like 112 317 - -
Psa4g3694 993 Gene3D ABC transporter type 1, transmembrane domain 840 926 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3694 Psa-Chr4 310162207 310166487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3694 142 370 RAD5 or RAD16-like Gene Family AT1G61140 67.635 1.39e-92 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g3694 SNF2_N 3.1e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3694 - - gmx:100792901 379.022