Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3677 ATGGAAATTCAATTACAACAACATAAAAAGAAAGAATTTGAAGCAGAAGGAGAAGAAAATAGGTTGCTACAATCCGAAGAATGCGAGACAATACCATTATCCTCGCCACAGTCATCTATATCAATATCGTTGGACTTGGACGGTGTTGATAGAGAGGACTGCGTCTACGCGGCAAAGGACAAAATCCATATTTTTGACTTGGAGTCGAACGGAAATAATGTTGGATCAACTGTGGTGCCACCGTTCTCATGGAAGAAGCTCTGGCTCTTCACAGGGCCAGGACTTCTAATGAGCGTGGCGTTTTTGGATCCGGGAAACTTGGAAGGAGACCTGCAAGCCGGCGCGATTGCAGGGTACTCATTGCTATGGCTTTTAATGTGGTCCACCATCATGGGGCTCTTAATACAACTTCTATCGGCGCGGCTCGGTGTGGCCACGGGGCGACACTTGGCGGAGCTTTGTAGGGAGGAGTATTCCAATTGGGCTAGACTAGTTTTATGGTTCTTAGCTGAGTTGGCTTTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTCTTAAGATTCTTAGCCATGGGATTCTTCCCATTTGGGCTGGTGTTGTCATCACAGCCTTTGATTGTTTTTTCTTTTTATTTTTGGAGAATTATGGAGTGAGGAAGTTAGAAGGTGTTTTTGCTGTTTTCATTGGAACTATGGGCTTTGCTTTTGCATGGATGTTCTTTGATACAAAGCCAAATGAAGAAGAACTTCTTATGGGTCTTTTGATCCCGAGAGTTGGCTCAAAAACACTACGCCAAGCAGTGGAAATCGTAGGATGTGTGATAACACCGCACAATGTATTTCTCCATTCCGCGTTAGTACAGTCGAGAGACATCGACATACGAAACAAAGGCCAAGTTCAAGAGGCTCTAAATTACTACTCAATTGAATCCTCAATAGCCCTTTTAATCACATTAATAATCAACCTATTTGTGATAGCAGTTTTTGCCAGAGTGTTCTATGGTACAGAACAAGCCAAAGACATAGGACTAGTGAATGCAGGACAATATCTTGAAGAAAAATATGGTGGTGGATTTTTTCCAATACTTTATATTTGGGGCATTGGTTTATTAGCAGCAGGACAAAGTAGTACAATTACTGGTACTTATGCAGGACAGTTTATAACTGAGGGATTCTTAAAACTGAACATTAAAAAATGGTTGAGGGCATTGATTACTAGAAGTTGTGCTATTGTTCCAACTATGATTGTAGCAATTGTTTTTAATACTTCAGAAGGTTCTTTGGATACTTTGAATGAATGGCTTAATGTGCTTCAAGCTATACAAATTCCTTTTGCACTTATTCCTCTTCTTACTTTGGTGTCTAAAGAAGAGGTCATGGGCACATTCAGAATTGGACCTCTTTTAGAGAGAGTGGCATGGACAGTGGTGGTGCTTGTGATAATGCTTTATGGATATATGTTATTAGATTTCTTTCTCTCTGAAGTGAAGGGACTATTGTTTGGATTTTTAGTGTTTCTTGGTGCCGGAGCATGGATTTCATTTATTGCTTTTCTTCTAAGACATAGTGGTGCTATTTCTTCTATCTTTCTTAGATCTCCAAATTCTGAAGGCTTTTCTCTTGCAAATTGA 1641 0.4028 MEIQLQQHKKKEFEAEGEENRLLQSEECETIPLSSPQSSISISLDLDGVDREDCVYAAKDKIHIFDLESNGNNVGSTVVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIALKILSHGILPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAVFIGTMGFAFAWMFFDTKPNEEELLMGLLIPRVGSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSIALLITLIINLFVIAVFARVFYGTEQAKDIGLVNAGQYLEEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGTFRIGPLLERVAWTVVVLVIMLYGYMLLDFFLSEVKGLLFGFLVFLGAGAWISFIAFLLRHSGAISSIFLRSPNSEGFSLAN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3677 546 Pfam Natural resistance-associated macrophage protein 108 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 166 192 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 196 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 221 242 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 270 293 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 377 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 405 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PRINTS Natural resistance-associated macrophage protein signature 439 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 47 545 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 MobiDBLite consensus disorder prediction 1 21 - -
Psa4g3677 546 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 85 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 Hamap Divalent metal cation transporter MntH [mntH]. 73 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Psa4g3677 546 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 47 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3677 Psa-Chr4 309219710 309221874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3677 50 526 Inorganic Solute Cotransporters AT1G47240 72.956 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3677 K21398 - gmx:100801411 907.516