Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3665 ATGTCTTCCTCAAACCCTTACCCTCCTCCTCCTCCTCCTCCTCCACCACCACCACCACCACCACCGTCACTTCCTTATCTCTCCAACCTCGGCTTCGGTTACTCCATCGCCATAGCTCTCGGCTTCCTCTTCCTTCTCTCAACTCTCATACTCTCTTCCTACCTCTGCTGCCGCACTTTCCGTAACCGTCATAACCGTCGTAACAACAACAACAATAACAACAGCAACAACCAACGAAACTCAGACGGTATCGTTCTACCGCGGGTGATTTTTGTTGCGGAGGATGACGATGATCGAGACGACGTCGTTTCGGGTTTGGACCAGAGCGTTATCAATTCTTACCCGAGGCTGCAGTATGGGAAGGAGATGATGGGACGTGATAGTACTTGCTCGATCTGTTTGTGTGAGTATAAGGATTCCGAGATGTTGAGGATGATGCCGGAATGTCGACACTATTTTCATATTTGTTGCCTTGATTCGTGGTTGAAGCTTAATGGCTCTTGTCCGGTGTGTCGGAATTCGCCTATGCCGACGCCGCTGTCGACGCCGTTGCAGGAGGTTGTTCCGCTTTCTCATTACATTGGTGAAAGGAGAACAAGGAGGTGA 606 0.5033 MSSSNPYPPPPPPPPPPPPPPPSLPYLSNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRHNRRNNNNNNNSNNQRNSDGIVLPRVIFVAEDDDDRDDVVSGLDQSVINSYPRLQYGKEMMGRDSTCSICLCEYKDSEMLRMMPECRHYFHICCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRTRR* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3665 201 SMART ring_2 130 171 IPR001841 -
Psa4g3665 201 SUPERFAMILY RING/U-box 110 177 - -
Psa4g3665 201 PANTHER RING-H2 FINGER PROTEIN ATL67 26 199 - -
Psa4g3665 201 CDD RING-H2_PA-TM-RING 129 172 - -
Psa4g3665 201 Pfam Ring finger domain 129 172 IPR001841 -
Psa4g3665 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Psa4g3665 201 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Psa4g3665 201 PANTHER RING-H2 FINGER PROTEIN ATL67 26 199 IPR044289 GO:0016567|GO:0016740
Psa4g3665 201 SUPERFAMILY Formin homology 2 domain (FH2 domain) 11 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3665 Psa-Chr4 308450855 308452120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3665 20 191 C3H Transcription Factor Family AT5G06490 36.898 9.89e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3665 - - vra:106773185 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3665 4 308450855 308452120 Psa4g3665 4 308450855 308452120 ECH