Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3640 ATGGACTCAGATTGGGATCTATATGCCGTTGTTAGAGGCTGCACCACCGCAACCTCCTCCACCACCACTACTACCACCACCACAACCGCCGCCAGAACAACCAGTGCTACACCTTCTTCATCTTATTTCTCTATTTACCCTGCTGAACAATCCGGTCAAGTTTTATCAATTTCAAACCCTTATGAATCAAAAAGTTCCGTTGAAGAATTGCATGAACTTTGCAAACCTTTCTTCATCCAATCGCAACCTCTCTCTTCAAATTCATTCTCTTATTCATCACCATCACCAAAATCATCAAATACACAGGTGAAACAACAGCAGCAGCTTATTAAGCAGCCTCACCATAGCGGTTCTGCTACAACACCAAGATCTAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTACAAGCTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGTTCACCATATCCAAGAGGATATTACAGATGTAGCAGTTCAAAAGGGTGTTTAGCTAGAAAACAAGTTGAGAGGAACAAATCAGACCCAACAATGTTCATAGTAACATACACCGGTGAACATAGTCACCCTGCTCCAACTCATAGAAACTCTCTTGCCGGTTCGACACGACAGAAACCTTCGTCGCCGCAAACTGTCACTGCCGAAGACTCTTCCCAACCCTTTACGAAACAAGTTTCTCCGTCGACCTCAGAGGCCGAAGAGGAAGAGGCTACACCTTCAAAGTCGGAAAGCAGAGAGGATTTGGAAGATTTGATGAATGATGATGAGGAAAACGAATTTGAGTTGTCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCCGGAAAAACAGTAGCTTCATCATCTGGTGGTGATTGTTTTGGTGACCCTTTTGCAGCTAGTATTGCACTTCCTGCTTGTGGTGGCCAATGA 972 0.4311 MDSDWDLYAVVRGCTTATSSTTTTTTTTTAARTTSATPSSSYFSIYPAEQSGQVLSISNPYESKSSVEELHELCKPFFIQSQPLSSNSFSYSSPSPKSSNTQVKQQQQLIKQPHHSGSATTPRSKRRKIQHKKVCEVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPSSPQTVTAEDSSQPFTKQVSPSTSEAEEEEATPSKSESREDLEDLMNDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSSGGDCFGDPFAASIALPACGGQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3640 323 Gene3D WRKY domain 127 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g3640 323 MobiDBLite consensus disorder prediction 89 119 - -
Psa4g3640 323 MobiDBLite consensus disorder prediction 197 271 - -
Psa4g3640 323 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 323 - -
Psa4g3640 323 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 323 IPR044810 GO:0003700
Psa4g3640 323 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g3640 323 MobiDBLite consensus disorder prediction 246 260 - -
Psa4g3640 323 MobiDBLite consensus disorder prediction 201 245 - -
Psa4g3640 323 SUPERFAMILY WRKY DNA-binding domain 140 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g3640 323 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g3640 323 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g3640 323 MobiDBLite consensus disorder prediction 89 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3640 Psa-Chr4 305536081 305538160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3640 1 322 WRKY Transcription Factor Family AT4G01250 47.463 9.42e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa4g3640 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3640 K13425 - gmx:100798084 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3640 4 305536081 305538160 Psa6g4466 6 391533094 391535039 ECH
Psa4g3640 4 305536081 305538160 Psa4g3640 4 305536081 305538160 ECH
Psa4g3640 4 305536081 305538160 Psa3g2448 3 208140583 208142462 ECH
Psa7g0680 7 46697717 46699375 Psa4g3640 4 305536081 305538160 ECH
Psa3g2448 3 208140583 208142462 Psa4g3640 4 305536081 305538160 PCT