Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3626 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAAACGCATCTGCATGGAACTCCAGTGTATTACTATTGCCCACCAATTTTAGAAGAGCGCGATTCTTTAACCTCTAATGATGGTCCGACCGATTCACTCACTGCTGGATTGCTGGTTGGCTTGAATGTGGAAGAATCCACACCTGATACTTACCAGCCTCCTCCTGCACCACTCCCTTATGATACAGTCTTGGGAGGTCCAGCATCGACAGACTCCAAGTCAGGCAGAGACACAGTTAGTGGTAGTAGTTTTGAAACTTTAGTTACATGCGAAGATATTGAAGAATGTGACCCTAAAGCTCAAGCTAAATCTGCACCATTATCTCCTAGCAAGGCAGAGCTGTGCAAATCAATTAAACCTCAAGCACTGGTGATAGAAGAAGAAGATGGCTGTCCAATCTGCCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTTACCAAATGTGAACACCACTTTCACTTGGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTGATCAGGAACTTGACTAG 576 0.4375 MGGCCCSARKTHLHGTPVYYYCPPILEERDSLTSNDGPTDSLTAGLLVGLNVEESTPDTYQPPPAPLPYDTVLGGPASTDSKSGRDTVSGSSFETLVTCEDIEECDPKAQAKSAPLSPSKAELCKSIKPQALVIEEEDGCPICLEEYDVENPKTLTKCEHHFHLACILEWMERSDSCPICDQEMIFDQELD* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3626 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 190 - -
Psa4g3626 191 SMART ring_2 140 180 IPR001841 -
Psa4g3626 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 190 - -
Psa4g3626 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Psa4g3626 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 190 IPR013083 -
Psa4g3626 191 Pfam Ring finger domain 140 180 IPR001841 -
Psa4g3626 191 SUPERFAMILY RING/U-box 130 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3626 Psa-Chr4 304854331 304861334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3626 1 191 C3H Transcription Factor Family AT4G00335 57.592 2.38e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3626 - - gmx:100792561 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2492 3 212111079 212114147 Psa4g3626 4 304854331 304861334 PCT