Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3607 ATGGATCGAGGCGACCAAATGGCGGCATTATCGGGTTCTGCGTCGTACTATATGCCGAGGGGATTAGCTGGTGCTGGAAACCAACATGAATTGCTTAGTTCGGCTAGTATTCGTCAACTATCGAATACCAACAATTCACCGTTTCAATCGGGTATCGGTGGTGGTGGCGGAGGTCCTATTGGATCAACATTGCCGATGGATTCTTCCGGAATTTCATCCCAAACCATCAATGTAGGCGGTCCTTCTGGGGGAGCTGCTTCAACTGGCGAGCCTGGCAAAAGGAAGCGAGGAAGACCGAGAAAATACGGGGCTGATGGAAGCGTGTCATTGGCTTTGACTCCAACAAGACCAGCAAGTCAGCCTGGGTCTGGATCTGGATCGCAAGTTCAGAAACGCGGTCGAGGCCGCCCTCCAGGATCAGGAAAGAAACAACAGCTGGCTTCTGTCGGAGGTTTGATCTCTAGTTCAGCTGGGAACGGTTTCGCTCCTCATGTCATCAACATTCCGATTGGAGAAGACATTGCAACGAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCTATTTTTATTATGTCTGCCAATGGTGCTGTCTCTACCGTGACGCTTTGTCAGGCTTCGACATCTGGGGGATCTGTCACATATGAGGGGCGTTTTGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAACAATGGCTTGCGAAATCGAACCGGTTCCTTAAGTGTTACTCTTGCAAGTCCTGATGGTCGTGTCATTGGTGGAGGCGTCGGTGGTCTGCTCGTCGCCGCAAGTCCAGTTCAGGTGATAATTGGAAGCTTTATGTGGGGTGGACAAAAGGCAAAGAACAAGAAGAATGAAGATTCGGAAAATCAAGAAGTTGGCATCGAGCAAGATCATCCTCAGCATCAGCATCAGCATCACGGAGTTCATAATCCGGTTGCAGTGAACAGCATTTCACCAAACCAGAATCTGACTTCAAGTTCTCTGAACTCTTGGCCTGCTTCGCGTCCATTGGATATGCGTAATTCGCATATGGACATTGATTTAATGCGCGGGTGA 1068 0.4916 MDRGDQMAALSGSASYYMPRGLAGAGNQHELLSSASIRQLSNTNNSPFQSGIGGGGGGPIGSTLPMDSSGISSQTINVGGPSGGAASTGEPGKRKRGRPRKYGADGSVSLALTPTRPASQPGSGSGSQVQKRGRGRPPGSGKKQQLASVGGLISSSAGNGFAPHVINIPIGEDIATKILAFSQQGPRAIFIMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNNGLRNRTGSLSVTLASPDGRVIGGGVGGLLVAASPVQVIIGSFMWGGQKAKNKKNEDSENQEVGIEQDHPQHQHQHHGVHNPVAVNSISPNQNLTSSSLNSWPASRPLDMRNSHMDIDLMRG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3607 355 MobiDBLite consensus disorder prediction 77 148 - -
Psa4g3607 355 Gene3D - 163 307 - -
Psa4g3607 355 ProSiteProfiles PPC domain profile profile. 158 304 IPR005175 -
Psa4g3607 355 CDD DUF296 163 276 IPR005175 -
Psa4g3607 355 MobiDBLite consensus disorder prediction 282 311 - -
Psa4g3607 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 327 IPR039605 GO:0003680
Psa4g3607 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Psa4g3607 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 327 - -
Psa4g3607 355 MobiDBLite consensus disorder prediction 283 308 - -
Psa4g3607 355 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Psa4g3607 355 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Psa4g3607 355 MobiDBLite consensus disorder prediction 112 130 - -
Psa4g3607 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3607 Psa-Chr4 303435736 303437958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3607 1 355 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.098 4.93e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3607 - - gmx:100799791 436.802