Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3568 ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATTCCTTACCATAAACACTGCTTCAAATGTAGTCATTGCAAGGGTTGTCTCACGATGAGTACATACTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTCGCAAAGTCTTCTGACAAAACAAATGACATGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGCGGAACCCTGGACAAATGCGCGACTTGCTCTAAAACCGTCTATCCGCTGGAAAAGGTGACACTGGAAGGTGAATGCTACCACAAGAACTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCGCAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTCCACCTTCTGAACCAATTGAAGTTGTTGAAGAGCCTTCGCAATCACCAGCAGAAGAAGCTCCTCAAGATCCACCAGAAGAAGCCTCTTGA 630 0.4254 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKHCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKTNDMNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSPPSEPIEVVEEPSQSPAEEAPQDPPEEAS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3568 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Psa4g3568 209 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Psa4g3568 209 Gene3D Cysteine Rich Protein 100 168 - -
Psa4g3568 209 SMART lim_4 103 155 IPR001781 -
Psa4g3568 209 SMART lim_4 9 61 IPR001781 -
Psa4g3568 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Psa4g3568 209 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Psa4g3568 209 Pfam LIM domain 104 159 IPR001781 -
Psa4g3568 209 Pfam LIM domain 10 65 IPR001781 -
Psa4g3568 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Psa4g3568 209 MobiDBLite consensus disorder prediction 172 209 - -
Psa4g3568 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Psa4g3568 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Psa4g3568 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Psa4g3568 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Psa4g3568 209 Gene3D Cysteine Rich Protein 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3568 Psa-Chr4 301009636 301012336 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Psa4g3568 LIM 2.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3568 - K09377 gmx:100800234 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2565 3 216175545 216177294 Psa4g3568 4 301009636 301012336 PCT