Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3559 ATGCCTCGTGGAACACTTCATGTTAATTTGATATGTGCTAAAGGCCTTAGCAACAATGATTTTCTCACCAATGTAGATCCTTATGTTATTCTCACATATCGGTCACAGGAGCACAAAAGCAGTGTGTCACAAGGTGCTGGATCCAACCCAAAGTGGAATGAGGTATTTCTTTTTACAGTTTCTGATGATGTTTGTGAAATTGATATGAAATTAATGGATGAAGATAGTTTTACTCAAGATGATTTTCTTGGCAGGGCAATAATTCCTTTCCATTCAGTGTTTTATGAGGGTATCATCCCAACAGCTGTTTACAGTGTAGTTAATGACAATAAAGAATATTGTGGAGAAATTCATGTGGCTTTCACTTTTACTCCTGAGGAATGTTTGTGA 390 0.3667 MPRGTLHVNLICAKGLSNNDFLTNVDPYVILTYRSQEHKSSVSQGAGSNPKWNEVFLFTVSDDVCEIDMKLMDEDSFTQDDFLGRAIIPFHSVFYEGIIPTAVYSVVNDNKEYCGEIHVAFTFTPEECL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3559 129 Gene3D C2 domain 2 126 IPR035892 -
Psa4g3559 129 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Psa4g3559 129 SMART C2_3c 5 102 IPR000008 -
Psa4g3559 129 Pfam C2 domain 4 92 IPR000008 -
Psa4g3559 129 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 127 - -
Psa4g3559 129 PANTHER C2 DOMAIN-CONTAINING 1 127 - -
Psa4g3559 129 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3559 Psa-Chr4 299529254 299530986 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3559 4 88 C2H2 Transcription Factor Family AT4G21160 31.765 2.00e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3559 - - adu:107473142 174.481