Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3557 ATGCCTCGTGGAACTCTTGAAGTCGTTTTGATCAGTGCCAAAGGTCTCGATGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATCCTTACTTACAGAGCACAGGAGCACAAGAGTAATGTTCAAGAAGGTGCTGGATCCAACCCTCAATGGAATGAAACCTTTCTTTTCACTGCTTCTGATTCTGCTTCTGAGCTCAATCTAAAGATAATGGAAAAGGACAACTATAATAATGATGATAATATCGGAGAAGTAACAATTCCTTTGGATGCTGTGTTTGAAGAGGGTAGTATTCCGGAGAGTGTTTACAAACTTGTGAAGGAAGAAGAATATTGTGGTGAGATTAAAGTGGCTCTCACTTTTACACCTGAGAGAAATGAAGAACAGGGTTACAATGAAGAGGAGAGTGGTGGATGGAAAGAATCAGCTAGTGAATATTGA 444 0.3964 MPRGTLEVVLISAKGLDDNDFLSSIDPYVILTYRAQEHKSNVQEGAGSNPQWNETFLFTASDSASELNLKIMEKDNYNNDDNIGEVTIPLDAVFEEGSIPESVYKLVKEEEYCGEIKVALTFTPERNEEQGYNEEESGGWKESASEY* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3557 147 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Psa4g3557 147 Gene3D C2 domain 2 125 IPR035892 -
Psa4g3557 147 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 147 - -
Psa4g3557 147 SMART C2_3c 5 102 IPR000008 -
Psa4g3557 147 MobiDBLite consensus disorder prediction 128 147 - -
Psa4g3557 147 Pfam C2 domain 4 100 IPR000008 -
Psa4g3557 147 PANTHER C2 DOMAIN-CONTAINING 1 147 - -
Psa4g3557 147 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 127 IPR035892 -
Psa4g3557 147 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3557 Psa-Chr4 299460023 299490325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3557 4 94 C2H2 Transcription Factor Family AT4G21160 29.670 1.81e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3557 - - gmx:100500006 233.032