Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3554 ATGCCTCGTGGAACTCTCGAGGTTGTTTTGATCAGTGCCAAAGGCCTTGATGATAATGATTTTCTCACTAGCGTAGATCCTTATGTGATTCTTACTTACAGAGCACAAGAGCACAAGAGTAATGTGCAAGAAGGTGCTGGATCCAATCCTCAATGGAATGAGACCTTTCTATTCACTGTTTCTGATTCTGCTTCTGAACTCAAACTAAAGATAATGGAAAAGGACAGCTACAGTGATGATAATATTGGAGAAGCAATAATTCCTTTGGATGCTGTGCTTGACGAGGGTAGTGTTCCAGAGAGTGTTTACAAACTAGTGAAAGAAGAACAATATTGTGGTGAGATCAGGATAGCTCTCACTTTTAAACCTGAGAGAAATCAAGAACAGGGTTACAATGAGGAAGAGAGTGGTGGATGGAAACAATCCGCTAGTGAACTTTGA 441 0.4059 MPRGTLEVVLISAKGLDDNDFLTSVDPYVILTYRAQEHKSNVQEGAGSNPQWNETFLFTVSDSASELKLKIMEKDSYSDDNIGEAIIPLDAVLDEGSVPESVYKLVKEEQYCGEIRIALTFKPERNQEQGYNEEESGGWKQSASEL* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3554 146 Pfam C2 domain 4 104 IPR000008 -
Psa4g3554 146 MobiDBLite consensus disorder prediction 123 146 - -
Psa4g3554 146 PANTHER C2 DOMAIN-CONTAINING 1 145 - -
Psa4g3554 146 MobiDBLite consensus disorder prediction 132 146 - -
Psa4g3554 146 Gene3D C2 domain 2 124 IPR035892 -
Psa4g3554 146 ProSiteProfiles C2 domain profile. 1 102 IPR000008 -
Psa4g3554 146 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 145 - -
Psa4g3554 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Psa4g3554 146 SMART C2_3c 5 101 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3554 Psa-Chr4 299352391 299353349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3554 4 93 C2H2 Transcription Factor Family AT4G21160 32.967 6.68e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3554 - - gmx:100500006 220.32