Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3549 ATGGAGGAAGAGAATAAAGAAATTAAATCATTTAAGGATTTGGGCTTAAATGAGTCATTGGTGGAAGCTTGTGAAAAGCTAGGTTGGAAGAATCCGCTTAAGATTCAAATAGAAGCAATTCCTCAAGCTCTACAAGGGAAAGATGTGATTGGAATTTCCCAAACAGGTTCCGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCATGCCCTATTAGAAACACCATTTTCTCTCCAGAACAATTTCTTTGCTTGTGTAATGTCTCCCACAAGGGAGCTTGCTTTTCAAATTGCTGAACAATTTCAAGCTCTAGGTTCTGAAATAGGTGTCAAGTGTGCTGTGCTTGTTGGACAGATTGACATGGTAAGACAGGCCATCGAGATTGCAAAGCGGCCTCATATTATTGTTGGGACACCTGGACGAGTCTTGGATCACCTAAAAAACACCAGAGGATTTTCTCTTGATAAATTGAAATACCTGATCTTAGATGAGGCAGACAGGCTGTTGGATGAGGACTTTGAGAAAACAATTACTGAGTTTTTAGAATTTATCCCTCGTGAGCGGAGAACGTTTCTTTTTTCAGCCACGATGACAAAGAAGGTCCAGAAGCTCCAAAAGGCTTGCTTAAGGAAGCCCGTGAAGATTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGCAGCAGTATCTCCTTGTGCCAGCAAAACATAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCGCCGAGAAATGTGAGACAACATGGCTTCTGGCTTTGATTCTTAAAAATCTTGGTTTGAAAGCCATCTCAATTAACGGTCATATGAGTCAGCCGAAAAGACTTGAAGCCTTGGAGAAGTTCAAGTCTAGGGAGTGCAATATTCTTGTTTGTTCTGATGTAGCCAGTAGGGGACTTGATATTCCAGCAGTAGATATGGTGATTAACTATACCATTCCCAAAAGCAAAGTTTATGTACATCGTGTGGGAAGAACTGCTCGTGCAGGTCGATCTGGTTTTGCCATTTCCCTCGTGAACCAATACGAAGTGGCATCGTACATGAAGATAGAGAAGTTTATAGGCAAAAAGCTACCTGAGTATCCTGCAGAGGAAGCGGAAGTTTTGTTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCAGCAGACAAGGAAATGAAGGAATCTGCGGAGAAGAAGAAAAGGAGGAGTGAAGGAGATTTTAGTGAAGAGGAGGAGGATGACATTGACAAATACTTGGGTGTCAAAAATAAAAAATCGTCCAAGAAGTTCAGAAGATAA 1329 0.4116 MEEENKEIKSFKDLGLNESLVEACEKLGWKNPLKIQIEAIPQALQGKDVIGISQTGSGKTGAFVLPILHALLETPFSLQNNFFACVMSPTRELAFQIAEQFQALGSEIGVKCAVLVGQIDMVRQAIEIAKRPHIIVGTPGRVLDHLKNTRGFSLDKLKYLILDEADRLLDEDFEKTITEFLEFIPRERRTFLFSATMTKKVQKLQKACLRKPVKIEVSSKYSTVDTLKQQYLLVPAKHKDCYLVYILTEMAGSTSMVFAEKCETTWLLALILKNLGLKAISINGHMSQPKRLEALEKFKSRECNILVCSDVASRGLDIPAVDMVINYTIPKSKVYVHRVGRTARAGRSGFAISLVNQYEVASYMKIEKFIGKKLPEYPAEEAEVLFLKERVSEAKRSADKEMKESAEKKKRRSEGDFSEEEEDDIDKYLGVKNKKSSKKFRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3549 442 Gene3D - 221 393 IPR027417 -
Psa4g3549 442 Gene3D - 1 219 IPR027417 -
Psa4g3549 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 217 IPR027417 -
Psa4g3549 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Psa4g3549 442 CDD SF2_C_DEAD 227 355 - -
Psa4g3549 442 MobiDBLite consensus disorder prediction 394 423 - -
Psa4g3549 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 385 IPR001650 -
Psa4g3549 442 PANTHER RNA HELICASE 2 430 - -
Psa4g3549 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 359 IPR027417 -
Psa4g3549 442 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Psa4g3549 442 Pfam DEAD/DEAH box helicase 34 204 IPR011545 GO:0003676|GO:0005524
Psa4g3549 442 MobiDBLite consensus disorder prediction 394 417 - -
Psa4g3549 442 SMART ultradead3 28 230 IPR014001 -
Psa4g3549 442 CDD DEADc_DDX47 10 216 IPR044765 GO:0005524
Psa4g3549 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Psa4g3549 442 Pfam Helicase conserved C-terminal domain 242 346 IPR001650 -
Psa4g3549 442 SMART helicmild6 266 346 IPR001650 -
Psa4g3549 442 Coils Coil 388 423 - -
Psa4g3549 442 PANTHER BNAC02G41920D PROTEIN 2 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3549 Psa-Chr4 299207623 299213606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3549 8 385 Eukaryotic Initiation Factors Gene Family AT3G19760 29.211 1.60e-57 193