Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3539 ATGAAGATCTTGATTATTTTGAAGGGTGTTGTTCAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGCAATACATTATTTCCTGCTTACACAATGAATCTAGAGTAATAAAGGAAGCAGTTGATTTGCTCTATGAATTGCTTCAAGACTGTTCTGGTTGGAATAAAAGTTTCTGCAAAACACTTTATGAGCATCCCAGCACGGTTAATTATCTTATTACCATTCTAAACGGACCTGTCAGCGATTCAATTGAAACTGCAGAAAAGATTTTGACGGAGCTTTTTGAAACAGACGAGGAAAACATTTGCTTGCTGTTAAGATTGGCTGGATCGAAGTCTTCAAGAATGTCAATGGCTAAAGCTATAATCAATTTCAATTTGGAAGAATCAAATTTAAAACTCCTTGGCGAGAAAGGAATTATACCTCCTTTGCTAGAAATGCTATCCGGAAGCATTGAATCGAAAGAATTGTCATTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTATTGCTGCATATGGAGGTGTCCCCATTATTCTAGATTTAATGTTCTCCCTTCGGACACGGGCGTTCATTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTGATGGAATTGGTTTAGTTAAGAAGGCGGTTTTGGCAGCGCACGGTGTATCACTAATTCTTCCCCTTCTTGATTACTCTGACTCAGAAATCAGGGAAACTACCATTACTCTTCTCTTTCTTTTCTCCCAACTTGAACCAGAAGGAGTTGTTGAGTACCTCTTCAGGCCTAGAAGACTTGAAGCTTTAGTCGGGTTTCTCGAGAATGACAAAAATAATGATGTACAAGTAGCTGCTACTGGTTTACTAGCTAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATTGAGTTAGGTGGCCTTGATGCAATTATAAACATTTTGAAAAACGGTACAATGGAAGCAAAAGAAAATGCTCTCAATGCACTCTTTAGGTTCACAGATCCCACAGATATCAAGTTACAACGCGATTTGGTTAGACGAGGAATATATCCGCTGTTAGTAAAATTCTTCAACACTGGTTCAATGACAGCAAAGGCAAGAGCAATAGCATTCATTGGTGATCTTTCCATGAGCACTCCAAAGCTCACAGTTGTTTCAAAATCATCATTTTTCCGGTGTTATCGATCATCACAAGCTCCTCTATGCTCGGCACACGGAAGTGTGTGCAATATGAATTCCATATTTTGTCTTTTGGAAGCAAATACATTACCTGGCTTGATTAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAGACACTTTCCACGTTGGTTATAAAAGACTTTCCTCAGAGAGGAGCTTGTGTTTTGCACGAATCGAATGCAATGAGACCCATATTGAAAATTTTAAACTGGGGAAATGATTCTCTCAAGGCAGAAGGTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATCATATGGCTCAATGGCTAGATTGCGTCTATTCCATCTTACTGGCATGAATGTATACGGGGACGGCCACCTAAGGAGAAAAGTTGCCAGGGTACTGTCATTGCTGGAACGCTATTCAAGATCGTCATCACATTCAATCACCGGAGTTATGTTGACTGAGTTTGGGTGCGGAAGGAAAGGAAAGATGTCATCACTGGGAACTTCAAAGGGGATTCTAGAGATCGTCAAGTTTGAGGTTTACGTTACTGTACCCATCGTTCTTATGTACGTTTATGCTAGCAATACCGACAACACCCTCCACAAGTTCATCGGAAAAAAATCATACGTTGAATATCCCAAAGATACACAAAAGCCACCACCACCAGAGGAGCTTAGAGAGATGCCAGGTTTGAGAACAGCTAATGCTGCAAAAGATGTTCTTATCGACAAAGAAATTTTTAATATCCTTTCGAAACACCTGCTTGATATTGCACCAGACCTAAAGGAATTGCAGTTTCAGGAACTGAATGAGTCACAAGCAGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAATTTGGTCGAGAAGTACAGGAATAACGTCCATTTTTACTTACTTATGAAGTGTCGCTACATAGTCAAGGAAGTTAAACAAGTCATTAGGGATATCGGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGACTACAGAGTGAGATGCAAAGGACCGAGTTTGAGGCTTCACAATCTCAGTTTGACTTTGTTGACAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAGGCTTTTGCGAACGATATGCTCGAAGAGATAGCAAGGGCATTCGGAGTGCCAATCATTTTGCTACTCTCTCAAGCTGATACAACAAGTGATTTCGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAAAGATATGGTTCAAGGGAAAAATATATTCCGCCACTTAATTCTCTCTGTTGTTCGATAACTGAAGCTGTTATGGTAGATCCTGTCAGTCTTTGCACCGCTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGCAATATGACTGACCCGAAAACGAAAGAGGTTCTTGAAGATACTATCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTCAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTTTGGCTTATTATTGCATGAGTCTTTGAGTCAGATGCAGGCTCTCATAAAAGAGAATTTGATTAACAAGGATTGGATTTCTATAGGAGAACTTACTGATATTATCATCTCCATCCTTGGGAACTCTGATTCTATTGATGTCAAGATGAAGATCTTGATTACTTTGAAGGGTGTTGTTCAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGTGA 3021 0.3952 MKILIILKGVVQGHARNKEKVVESQGWQYIISCLHNESRVIKEAVDLLYELLQDCSGWNKSFCKTLYEHPSTVNYLITILNGPVSDSIETAEKILTELFETDEENICLLLRLAGSKSSRMSMAKAIINFNLEESNLKLLGEKGIIPPLLEMLSGSIESKELSLSALVKLAGVHANKGIIAAYGGVPIILDLMFSLRTRAFISIKCFEILEKLSSSDGIGLVKKAVLAAHGVSLILPLLDYSDSEIRETTITLLFLFSQLEPEGVVEYLFRPRRLEALVGFLENDKNNDVQVAATGLLANLPKSERKLTMQLIELGGLDAIINILKNGTMEAKENALNALFRFTDPTDIKLQRDLVRRGIYPLLVKFFNTGSMTAKARAIAFIGDLSMSTPKLTVVSKSSFFRCYRSSQAPLCSAHGSVCNMNSIFCLLEANTLPGLIKLLQEEVHATAYEAIQTLSTLVIKDFPQRGACVLHESNAMRPILKILNWGNDSLKAEGLGLLEKVFVSKEMVESYGSMARLRLFHLTGMNVYGDGHLRRKVARVLSLLERYSRSSSHSITGVMLTEFGCGRKGKMSSLGTSKGILEIVKFEVYVTVPIVLMYVYASNTDNTLHKFIGKKSYVEYPKDTQKPPPPEELREMPGLRTANAAKDVLIDKEIFNILSKHLLDIAPDLKELQFQELNESQAARVALESLESDVKQASNLVEKYRNNVHFYLLMKCRYIVKEVKQVIRDIGRSLAALSLANTEVLSRISDQVNRLQSEMQRTEFEASQSQFDFVDKLNHGIKEQKLDQAFANDMLEEIARAFGVPIILLLSQADTTSDFEEVKKQYFQRVQVIERYGSREKYIPPLNSLCCSITEAVMVDPVSLCTATTCERSAIEVWFDDGNMTDPKTKEVLEDTILRSNIRLRESIVEWRELNYCFRIKSIRENLLSNFGLLLHESLSQMQALIKENLINKDWISIGELTDIIISILGNSDSIDVKMKILITLKGVVQGHARNKEKVVESQGW* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 640 807 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 219 556 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 807 1006 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 218 - -
Psa4g3539 1006 SUPERFAMILY RING/U-box 832 916 - -
Psa4g3539 1006 SUPERFAMILY ARM repeat 15 499 IPR016024 -
Psa4g3539 1006 SMART arm_5 303 344 IPR000225 GO:0005515
Psa4g3539 1006 SMART arm_5 420 460 IPR000225 GO:0005515
Psa4g3539 1006 SMART arm_5 260 302 IPR000225 GO:0005515
Psa4g3539 1006 SMART arm_5 132 171 IPR000225 GO:0005515
Psa4g3539 1006 SMART arm_5 218 258 IPR000225 GO:0005515
Psa4g3539 1006 SMART arm_5 14 53 IPR000225 GO:0005515
Psa4g3539 1006 ProSiteProfiles U-box domain profile. 845 919 IPR003613 GO:0004842|GO:0016567
Psa4g3539 1006 Pfam U-box domain 850 914 IPR003613 GO:0004842|GO:0016567
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 640 807 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 807 1006 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 219 556 - -
Psa4g3539 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 218 - -
Psa4g3539 1006 SMART Ubox_2 849 912 IPR003613 GO:0004842|GO:0016567
Psa4g3539 1006 Gene3D - 1 128 IPR011989 -
Psa4g3539 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 847 919 IPR013083 -
Psa4g3539 1006 Coils Coil 681 708 - -
Psa4g3539 1006 Coils Coil 746 766 - -
Psa4g3539 1006 Gene3D - 132 396 IPR011989 -
Psa4g3539 1006 Gene3D - 397 556 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3539 Psa-Chr4 298615510 298623828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3539 113 518 U-box Gene Family AT1G20780 24.573 7.80e-09 57.8