Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3538 ATGGTTGGATTGGAACTCATACCGATAGGTACAATTTTGGTTGTTTTAACTAGCCAGGTTGTGAGAACAGCTAATGCTGCAAAAGATATTCAGGAACTGAATGAGTCACAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAATTTGGTCGAGGAGTACAGGAACAGCGGCCGCTTTTACTTACTTATGAAGTGTCGTTACATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATCAGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTCATATCAAGAATTTCTGATCAAGTCAACAGACTACAGAGTGGGATGCAAAGGGCCGAGTTTGAGGCTTCACAATCTCAGCATGACATTTTTGATAAGTTGAACCATGGAATTAAGGAGCCAAACTTAGATCAAGCTTTTGTGAACGATATGCTCGAAGAGATGGCAAGGCCAGTCGGGGTGCTAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCAAGCATTAGGTGGGAAAAAGAAGAAGCTGCAAACAGGAAAGAAATAGCAGAAGTTATATTTTTAGAGCAGATCATTTTGCTACTCTCTCAAGCTAATACAACAAGTGATTTCGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAAAGATATGGTTCAAGGGAAAAATATATTCCGCCACTTAATTCTTTCCGTTGTTCGATAACTAAAGTTGTTATGGTAGATCGTGTCAGTCTTTGCACCGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGCAATATGACTGACCCAAAAACGAAAGAGGTTCTTGAAGATACTACCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTCAGAATAAAGTCTATCAGGGAAAACTTATTATCTAAATAG 963 0.3956 MVGLELIPIGTILVVLTSQVVRTANAAKDIQELNESQAARVALESLESDVKQASNLVEEYRNSGRFYLLMKCRYIVKEVEQVIRDIRRSLAALSLANTEVISRISDQVNRLQSGMQRAEFEASQSQHDIFDKLNHGIKEPNLDQAFVNDMLEEMARPVGVLVEPSEISKEIASIRWEKEEAANRKEIAEVIFLEQIILLLSQANTTSDFEEVKKQYFQRVQVIERYGSREKYIPPLNSFRCSITKVVMVDRVSLCTGTTCERSAIEVWFDDGNMTDPKTKEVLEDTTLRSNIRLRESIVEWRELNYCFRIKSIRENLLSK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3538 320 SUPERFAMILY RING/U-box 221 305 - -
Psa4g3538 320 Coils Coil 36 63 - -
Psa4g3538 320 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Psa4g3538 320 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
Psa4g3538 320 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 30 318 - -
Psa4g3538 320 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 30 318 - -
Psa4g3538 320 Pfam U-box domain 238 303 IPR003613 GO:0004842|GO:0016567
Psa4g3538 320 CDD RING-Ubox_PUB 239 281 IPR045210 -
Psa4g3538 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 308 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3538 Psa-Chr4 298614276 298615300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3538 28 305 U-box Gene Family AT3G46510 25.000 7.76e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3538 - - gsj:114377374 474.937