Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3526 ATGAGTTCAGGTGCAAATTTGGTTAGCACAATTATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTTTGCACAAGAATAATCTGCGGAAGATTTAGAGAAAGACATGTGGGTTCACGTACTATATTTCAAATTGAATCGAGACCCGATATTGAACAGCCAGAATGTGATGGTAATGAACCTGAACCTGAGCCTGCATTTGTTGCTGCAATTCCTACTTTAAATTTCAATGAAGAGGCTTTTAATTCCATTCAATGTACACAGTGTGTGATATGTTTGGGAGATTACAAAGAAAAAGAAGTGTTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATTTGGCTTAGGAAACAATCCACATGTCCTGTGTGTCGTTTGACATTGCATAATGTTTGTGAAGAAAAACATGGGAGACCTGTGGGATTCACCATAAGAGAGTCTCTTGATGAGTCTAATAGTTCAGAAGAGAATGAGAGAGAAGTTGAAGGTGATGTAAGAGAGATAGAATGA 531 0.371 MSSGANLVSTIIGFGMSATFIVFVCTRIICGRFRERHVGSRTIFQIESRPDIEQPECDGNEPEPEPAFVAAIPTLNFNEEAFNSIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDIWLRKQSTCPVCRLTLHNVCEEKHGRPVGFTIRESLDESNSSEENEREVEGDVREIE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3526 176 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Psa4g3526 176 Pfam Ring finger domain 89 132 IPR001841 -
Psa4g3526 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 138 IPR013083 -
Psa4g3526 176 SMART ring_2 90 131 IPR001841 -
Psa4g3526 176 SUPERFAMILY RING/U-box 89 138 - -
Psa4g3526 176 MobiDBLite consensus disorder prediction 152 176 - -
Psa4g3526 176 PANTHER OS11G0150450 PROTEIN 1 166 - -
Psa4g3526 176 PANTHER OS02G0676500 PROTEIN 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3526 Psa-Chr4 297932668 297935055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3526 79 135 C3H Transcription Factor Family AT4G10160 54.386 1.52e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3526 - - cam:101509791 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3526 4 297932668 297935055 Psa4g3526 4 297932668 297935055 ECH