Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3524 ATGGAGTCTGACAAGTCCCAGTCACTGAAACGGAGGAAGTACAATGGTCCAGTAGGCGATGTCAAAGTGTTGGTTGTTGATGCTAACTCGGCTTGCCGAGCAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAGGTTGTGACTGCTACACTAGCTTCCGACGCATTATCCATTATTTGGGATAAGAAGAATGAGATCAACCTTGTGCTTGTGGAGGCTCAGCTACCGGACATGGAAATACATGAGTTCATGGAGAAAGTGAAAGAAAGCGCTAATCTTCCATGTTTCATTATGACTGCTTATGACGATGACATTCCATCCATAACGAGAGCGCTAAGTACCGGGGCTAAATTGTGTTTTAGAAAGCCGGTTCTTACTTTTGATCTTCAGGAGCTGTGGCGGTTTGCAGTGTGGAACAGAATTGAAACAATATTCAGTGAAGAAGAATCTAGCTTCGGGTGGCGTCAGTCAGAGATGAGTACGGTTAACAAGGGTCTCGAGTCACAATCATCCATGAATGCAGAAGAACAGTCTCTCCAATATGCAAACGGCAAGAAGATACAAGAATCTCGTGATGAAGATATGACATTACTCCCGAAAAAGAGAAGGCGTACCTGGACTGATGACTTACATAGGAAGTTCTTGGATGCGGTTGAAACAGCAGGAATCAACGCTCGTCCGAAGGTGATATTCGAGCTCATGGATGTGGAAGGACTTACAAAAGAGAGTGTTGCAAACTATTTACAGAAATATCGTCAATCTATGAAACTGCGAGCTAGTGCAATGGCACAGCATGTGAATGGATATGTGTCTCTGACTAAGAAACGAGGAAAAGGCCCTCTATACTTCGAGAATCAAGATGTGACTAACAATCCCTCTATTCTCAGTAATGGTATGCCTCAGCAAGTTTCTGATTCCTCTGCGCTGTATGCTTCTCTGGAAAGCTCAAATTATCAGGACTCACCTTTCGAGCAAAAGCAACTGTGGCCACCATTGAAACAGCAACGTGTTGAAAAACAGTTGGATTTTCGAACACTGCTGGCCTTTGACATGAACGATCAATTTTACCCGGCACTTCCTATTGCTCTACTACCACCGGAAAAAAATGAAAAGATTGATGAAATTTTTTATTCCAAACAGCTGTTTACTGATGAGGATTTGAATATGTGGTTGTCAACGATTCCAGACAATGTGGATGCTGCTGCTGCTTTTGCTTGA 1221 0.4283 MESDKSQSLKRRKYNGPVGDVKVLVVDANSACRAIVSKMLLSLGYEVVTATLASDALSIIWDKKNEINLVLVEAQLPDMEIHEFMEKVKESANLPCFIMTAYDDDIPSITRALSTGAKLCFRKPVLTFDLQELWRFAVWNRIETIFSEEESSFGWRQSEMSTVNKGLESQSSMNAEEQSLQYANGKKIQESRDEDMTLLPKKRRRTWTDDLHRKFLDAVETAGINARPKVIFELMDVEGLTKESVANYLQKYRQSMKLRASAMAQHVNGYVSLTKKRGKGPLYFENQDVTNNPSILSNGMPQQVSDSSALYASLESSNYQDSPFEQKQLWPPLKQQRVEKQLDFRTLLAFDMNDQFYPALPIALLPPEKNEKIDEIFYSKQLFTDEDLNMWLSTIPDNVDAAAAFA* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3524 406 Pfam Myb-like DNA-binding domain 204 253 IPR001005 -
Psa4g3524 406 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Psa4g3524 406 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Psa4g3524 406 Gene3D - 202 257 - -
Psa4g3524 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 257 IPR017930 -
Psa4g3524 406 Gene3D - 21 149 - -
Psa4g3524 406 SUPERFAMILY CheY-like 20 138 IPR011006 -
Psa4g3524 406 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 337 IPR045279 GO:0009736
Psa4g3524 406 SMART REC_2 21 134 IPR001789 GO:0000160
Psa4g3524 406 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 21 337 - -
Psa4g3524 406 SUPERFAMILY Homeodomain-like 200 257 IPR009057 -
Psa4g3524 406 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 254 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3524 Psa-Chr4 297903009 297904970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3524 17 289 Response Regulator Gene Family AT4G31920 28.571 1.60e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa4g3524 Response_reg 2.5e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3524 - - mtr:MTR_8g032710 431.409