Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3512 ATGTCTCAAGATGTTTCTAGAAACATTGATCTCACTCTCGGAGAACCCAAAGAGGAACTGGAAACCGAAGATGGGTCGGCGGTAAAGGTGATGCAGGTGCCGGCGGGGATACCTATGTCTATGTCTATGCAAGTGAACAAGACGTTATTCCAAGCCCAAACTCAAGCACAATACCAGGCCCAAGCTCAACCGCCGGTTCAAAAAAGAGCATCCACTAAGGACCGTCACACCAAAGTAGAAGGTCGTGGCCGGAGGATTCGAATGCCTGCCACGTGTGCGGCTCGGATCTTCCAACTGACTCGAGAACTCGGACATAAATCAGACGGCGAAACAATCCGGTGGCTCCTCGAGCATGCTGAACCTGCCATTATTTCCGATCGGATCTTCCAACTGACTCGAGAACTCGGACATAAATCAGACGGCGAAACAATCCGGTGGCTCCTCGAGCATGCTGAACCTGCCATTATTTCCGCCACCGGAACCGGCACCGTCCCCGCCATCGCGATGTCTGTCAACGGAACTCTCAAAATCCCAACAACTTCCCCCAGCAAAAACTCCGACCCGGAACAACAACAACAATCTGAAGACTCTCCCGAAAAAAAGAAACGTAAACGACCAGCGAACAGTGCTTACGTGGACATAAACGACAGCGCCGTTTCAGTTTCAGCAGGTTTAGTAACAACCTCCAACGTAAACACAAACATGAACCCAAACCTTAATAACACCGCGATAATTCCGCAACAAACGGCAATTCCGTTACAGCAAAACATGGTCCCCGTGTGGGCCATACCATCAAACGCCGTGGTTCCAGGCGGAAACGCGTTTTTCGTGGTCCCAGCAAATCAGCCTCAGTTTTTCACATTAGCTAGACCAATCTCCGGTTTCGTTTCTTCCATGGTATCACCCGTTGTTCAACTCCAACAAGCCTCTGCGTTATCCAACCCATGTTCAACCTCTCCGTCGTCAAAGTCCCCGGCAAGAGCCACCGTCATGGCGCCGAGTACCGCCGCAACAACCACCACCCCGCAGATGCTGAGGGATTTTTCATTGGAGATTTACGATAGACAAGAGCTTCAGTTATTGTCGCGTTCTTCCTCCAAGCATTGA 1107 0.5077 MSQDVSRNIDLTLGEPKEELETEDGSAVKVMQVPAGIPMSMSMQVNKTLFQAQTQAQYQAQAQPPVQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIISDRIFQLTRELGHKSDGETIRWLLEHAEPAIISATGTGTVPAIAMSVNGTLKIPTTSPSKNSDPEQQQQSEDSPEKKKRKRPANSAYVDINDSAVSVSAGLVTTSNVNTNMNPNLNNTAIIPQQTAIPLQQNMVPVWAIPSNAVVPGGNAFFVVPANQPQFFTLARPISGFVSSMVSPVVQLQQASALSNPCSTSPSSKSPARATVMAPSTAATTTTPQMLRDFSLEIYDRQELQLLSRSSSKH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3512 368 ProSiteProfiles TCP domain profile. 127 158 IPR017887 -
Psa4g3512 368 MobiDBLite consensus disorder prediction 179 209 - -
Psa4g3512 368 MobiDBLite consensus disorder prediction 193 209 - -
Psa4g3512 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 125 IPR005333 GO:0003700
Psa4g3512 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 127 366 IPR005333 GO:0003700
Psa4g3512 368 MobiDBLite consensus disorder prediction 314 338 - -
Psa4g3512 368 PANTHER TRANSCRIPTION FACTOR TCP9 127 366 - -
Psa4g3512 368 PANTHER TRANSCRIPTION FACTOR TCP9 38 125 - -
Psa4g3512 368 MobiDBLite consensus disorder prediction 60 82 - -
Psa4g3512 368 ProSiteProfiles TCP domain profile. 72 126 IPR017887 -
Psa4g3512 368 MobiDBLite consensus disorder prediction 1 23 - -
Psa4g3512 368 Pfam TCP family transcription factor 124 204 IPR017887 -
Psa4g3512 368 Pfam TCP family transcription factor 71 124 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3512 Psa-Chr4 297115393 297118429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3512 64 367 TCP Transcription Factor Family AT2G45680 48.649 8.04e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa4g3512 TCP 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3512 - - cam:101488699 458.373