Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3511 ATGGATAATCATGGTCCTCCACATCCATATGGATATCCAAACCCATATGGATACCCTCCATATTCCTATCCATCTCCATATTCATCATATCCACCTCCACCTTCATCTCAATCTCAAGATCCTGCTGATCCACATCAACCTCCACCTGCAGCTGCACCTTATTCACCATATCCACCAAATTCTTCATACCCCTTCAACTACAACTACTCCTATCCACCACCACCTCCTCCATCAAACCCTTCACAGTATCCTCCTCCTCAACAATCTCATGCTTATCCTTATCCTTACCCTTACTCTTACCCTTATCCCTATCCTTACCAAGCCCTTCCAATTAAAGATGATCCAAACTCTCCTCAGAGTTCTGCTTACCCTACTTTGAGTGATCTTATGAACAATGCTCAGATATCTGATAACAGACCAAATACACCTCCATTATTTACACATTCCAATTCAGTTTCAACCGAAGAGAGACAAGAAGACTTTTGTGGCCATTCTAGTCATCATTCCTTTTCAGGTTTTGAAAATTCTTACTCTGATTTGGGGGGTTCACCCAAACTTTCAGCTGCTTCATCGGATGACTCAGTGTATAACCAGAGTTTGCAGATTGTTCCTGTTCAGAATAAAGGGTCTCTCAAATTTTTGCTCCTGCATGGTAATTTAGATATATGTATTCATGGAGCTAAGAATCTTCCTAATATGGATATGTTTCATAAGACTTTAGATGATATGTTTGGCAAATTTCCTGGTAATGTGGGTAATAAGATTGAGGGAACAATGAGTAGGAAGATTACTAGTGATCCTTATGTTTCGATTTCTTTGTTAAATGCTGTAGTTGGTAGAACTTTTGTGATTAGCAATAGTGAAAATCCTGTTTGGGAGCAACACTTTTATGTTCCTGTTGCACATAATGCTGCTGAAGTGCATTTTGTTGTTAAGGATAGTGATGTGGTTGGTTCACAACTTATTGGTGTCGTAGCGATTCCAGTGGAGCAGATATATACAGGTGAAAAGGTACAAGGGACTTACCCTATCCTTAATAACAGCGGGAAGCCTTGTAAGCAAGGTGCTGTCTTGAGTATTTCCATTCAGTTCATTCCGATGGAGAAGCTGTCCATGTATCATCAAGGAGTTGGAGCGGGGCCTGACTATATTGGTGTGCCGGGAACGTATTTTCCGTTGAGGAAAGGCGGAACTGTTACTCTATATCAAGATGCTCATGTTCCGGATGGATGCCTCCCTAATGTCATGCTTGATAATGGAATGCATTATGCTAATGGGAAGTGTTGGGCTGACGTCTTTGATGCGATACAGAAAGCGAAGCGTTTGGTTTACATTACGGGGTGGTCGGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCCGGTCATTCTCATGAAACTGATTTCACCCTTGGTGATCTTTTGAGGTCCAAGTCTCAAGAAGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGACCCTACCTCAAGAAGCATTCTTGGTTATAAGACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGGCGATTTTTCAAGCACTCTTCTGTGCAAGTGCTACTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGGCCAAGCAAAAGGAAGTTGAAACAATATATACACATCATCAGAAGACTATAATTCTGGACGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCATTTATTGGTGGACTTGATTTGTGTGACGGCCGATATGATACTCCCCATCATCCCCTCTTTAGGTCACTGCAGACACTGCACAAGGATGATTATCACAACCCTACTTTCACGGGTAGTACTGGTGGCTGTCCGCGGGAACCATGGCATGACTTGCATTCTAAAATTGACGGTCCAGCAGCTTACGATATTTTGACCAATTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTACAGGGATAAAAAAGTTTAGGAGTTCGTATGATGATGCGTTGCTCAAGATAGAAAGAATTTCAGATATTATCCATATGTCTGACGCTCCTAGTGACGGTGATGATAATCCTGAATCTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAGCTCTGTCAAGGGATTTCCGAAGGAGCCAAAAGATGCATCAGAAAAGAATCTAGTATGCGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGCGCTGCGCAGCATTATATTTATATAGAGAATCAATATTTCATTGGTTCTTCATACAATTGGAGCCAAAATAAAGAGATTGGTGCTAATAATTTAATTCCATTAGAGATTGCACTGAAGATCGCCGAAAAAATAAAGGCAAACGAGAGGTTTGCAGTATACATAGTTATTCCAATGTGGCCAGAGGGTAATCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAGATGATGTATGAGACAGTTTACAAGGCTTTGGCTGAAGTTGGGCTCGAAGGAGCGTTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGAAATCGAGAAGCCATAGATATGCATGAGAATATTGTTGTGTCTGGAATTCCTCCCCCACCAAATACTCCACAAGTAAATAGTCGAAATAACCGACGGTTCATGATTTATGTTCATTCAAAAGGCATGATTATTGATGATGAATATGTGATATTGGGGTCAGCAAACATTAATCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCAATATACATGGGCGAGAAAGCAGTGTTATCCACGCGGACAGGTTCATGGATACAGAATGTCGCTTTGGGCAGAGCATATTGGCACCATCGAAGACTGTTTCTTACAGCCGGAGAGCCTGGACTGTGTGAGAAGGGTTAGAACGATGTCCGAAATGAACTGGAATCAATTTTCATCAAATGATTTGACAGAGATGAGAGGACATTTAATGAAGTACCCGGTAGAAGTTGATAGAAAGGGTAAGGTCAAATCTCTTCCTGGTCATGAAGAGTTCCCTGATGTTGGAGGAAAGATAATAGGATCATTCATTGCCATTCAAGAGAATCTAACCATTTGA 3105 0.4174 MDNHGPPHPYGYPNPYGYPPYSYPSPYSSYPPPPSSQSQDPADPHQPPPAAAPYSPYPPNSSYPFNYNYSYPPPPPPSNPSQYPPPQQSHAYPYPYPYSYPYPYPYQALPIKDDPNSPQSSAYPTLSDLMNNAQISDNRPNTPPLFTHSNSVSTEERQEDFCGHSSHHSFSGFENSYSDLGGSPKLSAASSDDSVYNQSLQIVPVQNKGSLKFLLLHGNLDICIHGAKNLPNMDMFHKTLDDMFGKFPGNVGNKIEGTMSRKITSDPYVSISLLNAVVGRTFVISNSENPVWEQHFYVPVAHNAAEVHFVVKDSDVVGSQLIGVVAIPVEQIYTGEKVQGTYPILNNSGKPCKQGAVLSISIQFIPMEKLSMYHQGVGAGPDYIGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVMLDNGMHYANGKCWADVFDAIQKAKRLVYITGWSVWHKVRLVRDAGHSHETDFTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVETIYTHHQKTIILDADAGNNRRKIVAFIGGLDLCDGRYDTPHHPLFRSLQTLHKDDYHNPTFTGSTGGCPREPWHDLHSKIDGPAAYDILTNFEERWLRAAKPTGIKKFRSSYDDALLKIERISDIIHMSDAPSDGDDNPESWHAQIFRSIDSSSVKGFPKEPKDASEKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQNKEIGANNLIPLEIALKIAEKIKANERFAVYIVIPMWPEGNPTGAATQRILFWQHKTMQMMYETVYKALAEVGLEGAFSPQDYLNFFCLGNREAIDMHENIVVSGIPPPPNTPQVNSRNNRRFMIYVHSKGMIIDDEYVILGSANINQRSMEGTRDTEIAMGAYQPQYTWARKQCYPRGQVHGYRMSLWAEHIGTIEDCFLQPESLDCVRRVRTMSEMNWNQFSSNDLTEMRGHLMKYPVEVDRKGKVKSLPGHEEFPDVGGKIIGSFIAIQENLTI* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3511 1034 Pfam Phospholipase D C terminal 954 1024 IPR024632 -
Psa4g3511 1034 PANTHER PHOSPHOLIPASE D ALPHA 1 129 1034 - -
Psa4g3511 1034 Pfam C2 domain 218 344 IPR000008 -
Psa4g3511 1034 PANTHER PHOSPHOLIPASE D 129 1034 IPR015679 -
Psa4g3511 1034 SMART pld_4 880 907 IPR001736 GO:0003824
Psa4g3511 1034 SMART pld_4 545 580 IPR001736 GO:0003824
Psa4g3511 1034 CDD C2_plant_PLD 214 365 - -
Psa4g3511 1034 Gene3D Endonuclease Chain A 692 934 - -
Psa4g3511 1034 SMART C2_3c 219 341 IPR000008 -
Psa4g3511 1034 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 880 907 IPR001736 GO:0003824
Psa4g3511 1034 MobiDBLite consensus disorder prediction 27 87 - -
Psa4g3511 1034 SUPERFAMILY Phospholipase D/nuclease 416 644 - -
Psa4g3511 1034 MobiDBLite consensus disorder prediction 68 87 - -
Psa4g3511 1034 MobiDBLite consensus disorder prediction 27 60 - -
Psa4g3511 1034 Pfam Phospholipase D Active site motif 546 580 IPR001736 GO:0003824
Psa4g3511 1034 Pfam Phospholipase D Active site motif 881 907 IPR001736 GO:0003824
Psa4g3511 1034 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 545 580 IPR001736 GO:0003824
Psa4g3511 1034 Gene3D Endonuclease Chain A 417 662 - -
Psa4g3511 1034 SUPERFAMILY Phospholipase D/nuclease 707 966 - -
Psa4g3511 1034 ProSiteProfiles C2 domain profile. 196 342 IPR000008 -
Psa4g3511 1034 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 211 367 IPR035892 -
Psa4g3511 1034 Gene3D C2 domain 214 359 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3511 Psa-Chr4 297096352 297103318 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3511 29 1034 Phospholipase D Gene Family (Wang group) AT2G42010 67.433 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3511 K01115 - gmx:100805294 1581.62