Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3497 ATGGATAGTCAAGTGAAGTATGTTAAGGTTGAGAAAATTGTGGGCCGCACTGGTTCAAGGGGACAGGTGACTCAAGTTAGAGTGAGTTTTATGGATGACCCGACCCGTCGCATTATGAGGAATGTGAAAGGACCTGTTAGAGTGAATGATGTTCTCACTCTATTGGAGTCTAAAAGAGAAGCCAGGAGGTCTTCTCCTCTTCCTACCCCACCACCCAATTCTACTGCAATGGATAGTCAAGTGAAGTATGTTAAGGTTGAGAAAATTGTGGGCCGCACTGGTTCAAGGGGACAGGTGACTCAAGTTAGAGTGAGTTTTATGGATGACCCGACCCGTCGCATTATGAGGAATGTGAAAGGACCTGTTAGAGTGGATGATGTTCTCACTCTATTGGAGTCTGAAAGAGAAGCCAGGAGGTTGCGTTAG 426 0.4601 MDSQVKYVKVEKIVGRTGSRGQVTQVRVSFMDDPTRRIMRNVKGPVRVNDVLTLLESKREARRSSPLPTPPPNSTAMDSQVKYVKVEKIVGRTGSRGQVTQVRVSFMDDPTRRIMRNVKGPVRVDDVLTLLESEREARRLR* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3497 141 CDD S1_S28E 82 141 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 Gene3D - 1 64 IPR012340 -
Psa4g3497 141 Gene3D - 74 141 IPR012340 -
Psa4g3497 141 SUPERFAMILY Nucleic acid-binding proteins 2 63 IPR012340 -
Psa4g3497 141 CDD S1_S28E 6 63 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 Pfam Ribosomal protein S28e 80 140 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 Pfam Ribosomal protein S28e 4 63 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 PANTHER - 77 141 - -
Psa4g3497 141 PANTHER - 1 63 - -
Psa4g3497 141 MobiDBLite consensus disorder prediction 57 78 - -
Psa4g3497 141 Coils Coil 130 141 - -
Psa4g3497 141 PANTHER 40S RIBOSOMAL PROTEIN S28 1 63 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 PANTHER 40S RIBOSOMAL PROTEIN S28 77 141 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa4g3497 141 SUPERFAMILY Nucleic acid-binding proteins 77 141 IPR012340 -
Psa4g3497 141 ProSitePatterns Ribosomal protein S28e signature. 132 140 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3497 Psa-Chr4 296071613 296073220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3497 1 63 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 74.603 1.19e-24 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3497 K02979 - pop:7488050 96.2857