Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3493 ATGCCATCGCGTCCGCCCCCTCAACCACCGCTTCCATCCGCGGCAGCCATCACATCTCCCCACCACCACAACCACCACCGTGAAATGATAATCGGCAGCTGCATCGCTGGAGCAGTTTTCTTAACAGCGGTGATAATCTCCGTAGCAATCTTCATCTACCGGAAACTATCACACAACCGAACGACGCCGTTTGAACAAAGCCAAAGAAGATTCTCATTCTCAGTACTCCGTCGCGCTTCGAACTCGTTCTCGGCTTCGACTCGGCTCGGACACGGCGGCTTCGGCTCGGTTCATAAAGCCACGCTACCAACCGGCGAAACCGTGGCTTTGAAAGTAATGGATTCGCCGGGTTCGATTCAAGGTGAGAGAGAGTTTCATAACGAGCTCTCTCTGTGTTCGAATCTTCGTTCTCCTTTCATTCTTTCACTTCTCGGTTATTCTTCGGACCGGTCTGGGAGAAAGCTTGTTTTGGTTTACGAACTCATGGAGAACCGGAGTCTTCAGGACGCGCTTTTAGACCGGCGGTGTCCTGAATTGATGTGCTGGTTGAACCGATTCGATGTGGCGGTTTCCGTTGCTAAAGGACTTGAGTATCTTCATCATAACTGTCATCCTCCTGTGATTCATGGTGATATAAAACCTAGCAATGTTCTTTTGGATCGTGAATTTAGGGCTAAGATTGGGGATTTTGGACTTGCTAGGGTTAAGAGTTTGGAGGATTCTGGAATGGAGATGATGGTGGAGGAGATTCATGAGAAGAAGAAGAGAGATGATGTTGTTGTTAGTGTTGGTGTTGAGGATTGTAGTTCTGTTTCTGTTGTTGAGGAATCAGAGAGTGTTATTACTAATACTACGGTTGGATTTGATCGGTCGCCAGAGAGTTTTAATGTGAGGGTTTTGGATTCAGATGCTTCGCCGGAGGTGGGGGTTGTTTCGCCGGAGATGAGCGGTGTTGAGAAATTAAGTGTTGTGTCTGATGGTTGTTTTGATAAGTTTAGTATTGATAGTGGGAATCAGAGGAAGAGAGGTGGGGGTTGTGTTCGTGGTGGTTCTGGGAGAGATTGGTGGTGGAAGCAAGAGAATAATGGGGGAGGATCTGAATCAGGGAGGGTGAAGGATTATGTTATGGAGTGGATTGGGAGTGAGATAAAGAAAGAGAGACCTAAGAGTAGTGAGTGGGTTGGTTCTGGTTCTTCGATTTGTTCAGGTGTTGGCGATGTGGCTGCGCCGCCGAAGGTGGAAGGTAAGAAGAAACAGAGGAAGAAATTGGAATGGTGGGCTTCACTTGATGAGGAGAAGGTTAAGGGGAAGAAGAATAGAAAACCAAGGGAATGGTGGAAGGAGGAGTTTTGTGAGGAACTTTCAAAGAAGAGTAGGAAGAAAAAGAGAAGCCTCGATTGTCGCGGAGAATCGTGGTGGCAGAGAGACGAGGATGTAGGTAGTACGGCGGGGGTGAAGAAGAAAAAGAGGAAAAGTAAGAGTAGTAGAGGGAGTATTGATTGGTGGTTGGACGGTTTAAGCGGCGACCTTAGGAATAATGGAAGGAGAAATAGTCAAGATTGGGGTAATGGTGATATACCAAAGAGCGGCGGAATCAGTAGCACACCAAGTATGAGAGGAACGGTTTGTTACATTGCTCCTGAATACGGTGGCGGTGGACAATTATCCGAGAAATGTGATGTGTATAGTTTTGGTGTTCTGCTTTTGGTTTTGGTTGCAGGAAGAAGACCACTTCAAGTAACAGCATCACCAATTTCAGAATTTGAGCGAGCAAATCTCATTTCATGGGCTAGACAACTTGCTCACAATGGGAAACTCTTAGATCTTGTTGATAGTTCTATTCATTCTTTGGATAAGGAACAAGCATTGCTTTGCATCACCATTGCATTGTTGTGTTTGCAGAGATCTCCTGGGAAAAGGCCTTCCATGAAAGAGATTGTTGGGATGCTTTCCGGTGAGGCCGACCCACCTCACCTGCCCTTTGAATTCTCACCTTCACCACCCTCTAATTTCCCTTTCAAATCAAGAAAAAAGGCTAGGTGA 2043 0.466 MPSRPPPQPPLPSAAAITSPHHHNHHREMIIGSCIAGAVFLTAVIISVAIFIYRKLSHNRTTPFEQSQRRFSFSVLRRASNSFSASTRLGHGGFGSVHKATLPTGETVALKVMDSPGSIQGEREFHNELSLCSNLRSPFILSLLGYSSDRSGRKLVLVYELMENRSLQDALLDRRCPELMCWLNRFDVAVSVAKGLEYLHHNCHPPVIHGDIKPSNVLLDREFRAKIGDFGLARVKSLEDSGMEMMVEEIHEKKKRDDVVVSVGVEDCSSVSVVEESESVITNTTVGFDRSPESFNVRVLDSDASPEVGVVSPEMSGVEKLSVVSDGCFDKFSIDSGNQRKRGGGCVRGGSGRDWWWKQENNGGGSESGRVKDYVMEWIGSEIKKERPKSSEWVGSGSSICSGVGDVAAPPKVEGKKKQRKKLEWWASLDEEKVKGKKNRKPREWWKEEFCEELSKKSRKKKRSLDCRGESWWQRDEDVGSTAGVKKKKRKSKSSRGSIDWWLDGLSGDLRNNGRRNSQDWGNGDIPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGKLLDLVDSSIHSLDKEQALLCITIALLCLQRSPGKRPSMKEIVGMLSGEADPPHLPFEFSPSPPSNFPFKSRKKAR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3493 680 Pfam Protein kinase domain 535 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3493 680 Pfam Protein kinase domain 85 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3493 680 ProSiteProfiles Protein kinase domain profile. 83 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3493 680 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Psa4g3493 680 Gene3D Transferase(Phosphotransferase) domain 1 506 656 - -
Psa4g3493 680 Gene3D Transferase(Phosphotransferase) domain 1 162 287 - -
Psa4g3493 680 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
Psa4g3493 680 SMART serkin_6 83 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3493 680 MobiDBLite consensus disorder prediction 658 680 - -
Psa4g3493 680 PANTHER OS07G0586332 PROTEIN 1 680 IPR044576 -
Psa4g3493 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Psa4g3493 680 SUPERFAMILY Protein kinase-like (PK-like) 57 669 IPR011009 -
Psa4g3493 680 PANTHER OS07G0586332 PROTEIN 1 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3493 Psa-Chr4 295919733 295922813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3493 510 650 Receptor kinase-like Gene Family AT3G58690 34.899 1.53e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Psa4g3493 Pkinase 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3493 - - gmx:100814933 862.448