Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3468 ATGGACAAGGGACCACCTCCTACCCTCTTTGTCAACGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAGAAGGGAAAAAATGCCAAACCAGAAGAATCTAAACCAGTTAAAGTTGTTTCAGGACCTGTGAATCCTAAACCCCCCATTAGTAAGGGTAATGATGCTAAGAAATCTTCCCAGGGTGGTTCCAGTGGCAAACTTGCTTTCAGCTTGAAACAAAAGTCAAAGCTTGTGCCGGCCCCTGTTAAGTTGGCCGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAACGATGCACCTACAAAACGGCAAAAATTGGTTCAGGATGATGGCATTGAGCAAGTATCAAGACAACTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTTGCAAGTTTTGTGGCTAAAAATGGAAGGCCCTTTGAGGATGTTACACGGCAAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGTTAAATGTCCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAGGAGAAGGCCCTTTCACAGTCCAAGGAACCACAGGCAAATCAAAATGTGGGGACAAGCATTCCATCTTCCAGACCAACAAATGGACCTCAGAGATCATCCCAGCAACATTCAACTTACCAAATCCCTGCCTCTGCTTTATATGATAGTGTTGAAGCGTCAAGGGCTTCTGGATCTTCAGCATTTTCAGTTGGAAGTGGAAGCTCAGATGAGCCCGGTGGATCAACCAATGCCAGTTCTTTAGCGCTAATGGAGTTTTACATGAAGAAAGCTGCACAAGAAGAAAAGTTCAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTCCTTCTCTTCAAGTTTCAACTTTTGATGCATCTGCTTCAGGGAAGAAGGGTCATCACATGGGTGATTATATTCCTCAGGAAGAACTTGAAAAGTTCTTGGCTAGTTGTAATGACGCAGCAGCAATGAAAGCTGCTAAGGAGGCTACTGAGAAGGCCAAAATTCAGGCTGATAATGTGGGCCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCTATCATGGCAGGCAATGTAAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAAGATGACATCTATGAGCAGTACAAAAAGAGGATGATGCTTGGCTACCGTCACAGACCGAATCCTCTGAACAATCCCCGCAAGGCTTACTATTGA 1320 0.4447 MDKGPPPTLFVNDGSFMERFRQLQQEQEKGKNAKPEESKPVKVVSGPVNPKPPISKGNDAKKSSQGGSSGKLAFSLKQKSKLVPAPVKLADDDEDEIDAGYVSNDAPTKRQKLVQDDGIEQVSRQLDVAPPPPSDPTVKKVADKLASFVAKNGRPFEDVTRQKNPGDTPFKFLFDVKCPDYKYYEHRLAQEEKALSQSKEPQANQNVGTSIPSSRPTNGPQRSSQQHSTYQIPASALYDSVEASRASGSSAFSVGSGSSDEPGGSTNASSLALMEFYMKKAAQEEKFKQPKHSKDEMPPPPSLQVSTFDASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEATEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3468 439 Gene3D Surp module 113 198 IPR035967 GO:0003723|GO:0006396
Psa4g3468 439 MobiDBLite consensus disorder prediction 58 75 - -
Psa4g3468 439 MobiDBLite consensus disorder prediction 248 268 - -
Psa4g3468 439 SUPERFAMILY Surp module (SWAP domain) 121 196 IPR035967 GO:0003723|GO:0006396
Psa4g3468 439 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 439 IPR040169 -
Psa4g3468 439 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Psa4g3468 439 Pfam G-patch domain 357 400 IPR000467 GO:0003676
Psa4g3468 439 MobiDBLite consensus disorder prediction 192 236 - -
Psa4g3468 439 MobiDBLite consensus disorder prediction 1 77 - -
Psa4g3468 439 MobiDBLite consensus disorder prediction 22 38 - -
Psa4g3468 439 ProSiteProfiles G-patch domain profile. 356 403 IPR000467 GO:0003676
Psa4g3468 439 MobiDBLite consensus disorder prediction 282 305 - -
Psa4g3468 439 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 439 - -
Psa4g3468 439 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Psa4g3468 439 MobiDBLite consensus disorder prediction 195 235 - -
Psa4g3468 439 SMART G-patch_5 354 401 IPR000467 GO:0003676
Psa4g3468 439 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3468 342 439 C2H2 Transcription Factor Family AT5G26610 32.743 7.49e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3468 K13096 - gmx:100786213 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3468 4 294500859 294506682 Psa4g3468 4 294500859 294506682 ECH