Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3465 ATGTCCGAAGCTCCGGCGAGTCCTGGCGGTGGAAGCCACGAAAGCGGCGAACATAGTCCTCGTTCTAACATACGTGAACAAGATAGGTTTCTTCCTATCGCCAACATTAGCCGCATCATGAAGAAAGCTCTCCCTGCTAATGGCAAAATCGCGAAAGATGCTAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAACGGCGATGATTTGCTTTGGGCGATGGCTACTCTAGGTTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGGGTGATACCAAGGGCTCTGGCAAGGGTGGAGACTCGTCTGCTAAGAAAGATCTTCAGCAAGGTTCTAATTCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCTTACACAAAGTCTCAGGTAACACTACTCTCTTAA 489 0.4622 MSEAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSGKGGDSSAKKDLQQGSNSQLVHQGSFSQGVSYTKSQVTLLS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3465 162 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Psa4g3465 162 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Psa4g3465 162 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Psa4g3465 162 SUPERFAMILY Histone-fold 27 138 IPR009072 GO:0046982
Psa4g3465 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Psa4g3465 162 MobiDBLite consensus disorder prediction 128 144 - -
Psa4g3465 162 MobiDBLite consensus disorder prediction 117 144 - -
Psa4g3465 162 MobiDBLite consensus disorder prediction 1 27 - -
Psa4g3465 162 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
Psa4g3465 162 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa4g3465 162 Gene3D Histone, subunit A 17 149 IPR009072 GO:0046982
Psa4g3465 162 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3465 Psa-Chr4 294233361 294234385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3465 1 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.205 1.34e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa4g3465 CBFD_NFYB_HMF 6.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3465 K08065 - gmx:100798667 266.929