Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3419 ATGGATGGTGGTGGCTTTCCTTATGCTGTTAATGAAAACTTTGTGGATTTCTTTCAAGGGATTAATCATGTTCCTGTCAATTATGCCTTTCCTGGCTCAATGCCTGATCAGGATAATGTCTACTGGTCAATGAACATGAGTCCCTATAAGTTTGGAATGTCTGGCCCTGGAAGTACATCTTATTATAGTTCTTATGAGGTAAATGATCATTTGCCAAGAATGGAGAACAACAGGGTCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCGGCTTCATCAGATTCTCCGCCTAGAAGAGACGGAGTCAGCATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTCATATGGCAAGACAACATTGATCCCGACAATATGACTTATGAGGAACTACTGGACCTGGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTTCTCAAGAACTTATTGATACACTTCCAACCTCGAAGTACAAATTCGGTAGCTTATTCAAAAGAAAAAATTCTGGAAAAAGGTGTGTAATTTGCCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCACGGCGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGATTCAACGCAGTAG 705 0.4241 MDGGGFPYAVNENFVDFFQGINHVPVNYAFPGSMPDQDNVYWSMNMSPYKFGMSGPGSTSYYSSYEVNDHLPRMENNRVEWEYPSEVISEEPASSDSPPRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEDSTQ* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3419 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 4 233 - -
Psa4g3419 234 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 233 IPR033276 GO:0004842|GO:0016567|GO:0046621
Psa4g3419 234 MobiDBLite consensus disorder prediction 87 124 - -
Psa4g3419 234 SUPERFAMILY RING/U-box 182 228 - -
Psa4g3419 234 SMART ring_2 183 223 IPR001841 -
Psa4g3419 234 Pfam Ring finger domain 182 224 IPR001841 -
Psa4g3419 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 228 IPR013083 -
Psa4g3419 234 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Psa4g3419 234 MobiDBLite consensus disorder prediction 109 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3419 Psa-Chr4 289545680 289550075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3419 5 234 C3H Transcription Factor Family AT3G63530 55.603 8.41e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3419 K19045 - gmx:100785290 422.935