Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3400 ATGTCTGAATTTAGATATATTGGAGATGACGGAGGTGCTAAGGAGACAGTGAAGTATGAATGTCTAGAATGTTTAGAGTTTTGCAGAGTGAAGTTTGGATATCAATGTTTGGAGATACTTGATGCTATGGAGAAGAAAAATGCAAGCTTACTGAAGAGTCACATGATCAAAACATATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAAATGTTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTTATTGGAGTCGGAGGACAGGGAAGTGTTTACAGAGCAGAGTTGCTTACCGGACAAGTTGTAGCTGTGAAGAAACTTCATTCATTACAAAATGGAGAAATTTCAAATCTGAAAGCTTTTGCAAGTGAGATTAAAGCTTTAATTGAAATCCGACATCAAAACATTGTGAAGTTATATGGGTACTGTTCACATCCGTTGCATTCGTTTTTGGTTTATGAGTTCTTGGAGAATGGCAGTGTGGACAAGATCTTGAAAGACGATGAGCAAGCAACTACATTTGATTGGAATAGAAGGGTGAATGTCATTAAGGATGTTGCAAGCGCTTTATGTTATATGCATCATGATTGTTCACCTCCTATTGTTCATCGCGATATCTCCAGCAAGAATGTCATTTTGGATTTGGAATATGTAGCTCATGTATTGTATCAGACTTAG 690 0.3696 MSEFRYIGDDGGAKETVKYECLECLEFCRVKFGYQCLEILDAMEKKNASLLKSHMIKTYLQYGVLMEKWCMRNVIEATEEFDNKHLIGVGGQGSVYRAELLTGQVVAVKKLHSLQNGEISNLKAFASEIKALIEIRHQNIVKLYGYCSHPLHSFLVYEFLENGSVDKILKDDEQATTFDWNRRVNVIKDVASALCYMHHDCSPPIVHRDISSKNVILDLEYVAHVLYQT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3400 229 PANTHER LEUCINE RICH REPEAT KINASE 2 45 225 - -
Psa4g3400 229 Pfam Protein kinase domain 82 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3400 229 Gene3D Transferase(Phosphotransferase) domain 1 160 226 - -
Psa4g3400 229 ProSitePatterns Tyrosine protein kinases specific active-site signature. 205 217 IPR008266 GO:0004672|GO:0006468
Psa4g3400 229 ProSiteProfiles Protein kinase domain profile. 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3400 229 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 45 225 - -
Psa4g3400 229 Gene3D Phosphorylase Kinase; domain 1 41 159 - -
Psa4g3400 229 SUPERFAMILY Protein kinase-like (PK-like) 68 225 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3400 Psa-Chr4 288866549 288870146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3400 72 225 Receptor kinase-like Gene Family AT4G08850 52.866 1.47e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa4g3400 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3400 - - mtr:MTR_0365s0020 270.781