Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3393 ATGGAAAGAATGTTCCAATCAAAGAATCCCTCGACTATGATGAATTCTATTGATAGACCCATGTGTGTTCAAGGTGATTCTGGCCTTGTCCTCACCACTGATCCAAAACCACGGCTTCGTTGGACTGTCGAACTCCATGAACGCTTCATCGATGCTGTTGCTCAGCTTGGAGGACCGGATAAAGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCGATTAAGGATGGTATGAGAGTTTCAGCTTTTGAACTGCAACGAAATACTGGCACCTCGTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCACAGAAGATTGCATGAACAATTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCCCAAGGAAAATACATGCAAAGTATATTAGAGAAAGCTTATCACACACTTGCAGGAGAAAACATGGCAGCTGCAGCTACAAATTTCAAGGGTATAAATGGAACTCAAAGCATCCCTGACATGAAAGATTTTGTTTCTCCTCTTAATAACTTTCCTCATTTCCAAGACCTTAACATTTGTGGTAGTGATGAGGTACAGCTCGAGAGACCAATCCTTGAAGGATTTATGCCAACTAATAATAATGAAAACATGGTTGTTGGGAAGACAAGGACTAACCCTTTTGATGAAAATGGAAAGAGTCCCTTAATTTGGAACAATAATGATCTCAGGCTTCATGATTTTGGAACAACTTCATCGTGCATTAGTCCTCAAGATGTTCCTAGTTTCAAAACTGACTCATTGGATGAAAGTGATGAAAGTGATCCTACTGGTGAAGCTTATGACACAAAGGTGAGTGAGAAGAAGTTTGGTGCATCTATGAAGCTTGGAATAACAACACCTATGATCAATGATGTGGGAACTGGTAGAAGCTTATTACCATTTGGTTGA 1014 0.4112 MERMFQSKNPSTMMNSIDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFIDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGTSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMAAAATNFKGINGTQSIPDMKDFVSPLNNFPHFQDLNICGSDEVQLERPILEGFMPTNNNENMVVGKTRTNPFDENGKSPLIWNNNDLRLHDFGTTSSCISPQDVPSFKTDSLDESDESDPTGEAYDTKVSEKKFGASMKLGITTPMINDVGTGRSLLPFG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3393 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 280 - -
Psa4g3393 337 MobiDBLite consensus disorder prediction 286 306 - -
Psa4g3393 337 Pfam MYB-CC type transfactor, LHEQLE motif 132 170 IPR025756 -
Psa4g3393 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Psa4g3393 337 Gene3D - 35 93 - -
Psa4g3393 337 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Psa4g3393 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Psa4g3393 337 Pfam Myb-like DNA-binding domain 39 87 IPR001005 -
Psa4g3393 337 MobiDBLite consensus disorder prediction 280 306 - -
Psa4g3393 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 280 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3393 Psa-Chr4 288531378 288534052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3393 4 275 G2-like Transcription Factor Family AT1G79430 60.554 4.08e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa4g3393 Myb_DNA-binding 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3393 - - gmx:100796268 422.935