Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3385 | ATGGGTGGGATGGGAAAGACTACGCTTGCCCAACACTTATACAATGATCCAAGTATGGAGGAGAAATTTGATGTCAAAGTCTGGGTCTGTGTTTCACAAGAATTTGACGTTTTCAAGCTAACGAGAGCTATTCTCGAGGGTATCACTAAATCAACGGATGAAAGTAGACACTTAAGTATGGTTCAAGAAAGGTTGTTGAACAAATTGTCAGAGAGGAGATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAAACGTGACCAGTGGGAAGCTTTGCAGGCTCCTTTTAAATATGGAGCTCAGGGAAGCAAAGTTCTTGTCACTACACGCAGTAAGAGAGTTGTTTCAATCATGCGATCAAATAAAATGCTTCAGCTAGAGCAGTTACAAGAAGAACATTGTTGGAAGTTGTTTTCCAAACATGCATTCGAAGATGAAAATCCTCAAATGAATCCTGACTTTAAGGAGATCGGTATAAGGATCCTTAGAAAATGGCAAGGACTTCCTTTAGAATTGAAAACAATTGGAAGTCTCTTATACACAAAATCATCTTTGATAGAGTGGGAAACGCACTGCGCGACAGTGTTCATCGCCACTTTTCAGAATTGTTTAGCGCATTGTTCCGGCCTTGTTCATCGAACTGTGTGTCTGCATTGTACATCGCTATTGTTTGCGGTACTACTCATCACCACTGCCTGA | 699 | 0.4063 | MGGMGKTTLAQHLYNDPSMEEKFDVKVWVCVSQEFDVFKLTRAILEGITKSTDESRHLSMVQERLLNKLSERRFLLVLDDVWNEKRDQWEALQAPFKYGAQGSKVLVTTRSKRVVSIMRSNKMLQLEQLQEEHCWKLFSKHAFEDENPQMNPDFKEIGIRILRKWQGLPLELKTIGSLLYTKSSLIEWETHCATVFIATFQNCLAHCSGLVHRTVCLHCTSLLFAVLLITTA* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3385 | 232 | PRINTS | Disease resistance protein signature | 68 | 82 | - | - | |
| Psa4g3385 | 232 | PRINTS | Disease resistance protein signature | 165 | 179 | - | - | |
| Psa4g3385 | 232 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 202 | IPR027417 | - | |
| Psa4g3385 | 232 | PANTHER | OS05G0414200 PROTEIN | 1 | 208 | - | - | |
| Psa4g3385 | 232 | Pfam | NB-ARC domain | 1 | 191 | IPR002182 | GO:0043531 | |
| Psa4g3385 | 232 | Gene3D | - | 128 | 202 | IPR042197 | - | |
| Psa4g3385 | 232 | Gene3D | - | 1 | 126 | IPR027417 | - | |
| Psa4g3385 | 232 | PANTHER | DISEASE RESISTANCE PROTEIN RP | 1 | 208 | IPR044974 | GO:0006952 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g3385 | Psa-Chr4 | 287601004 | 287603778 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3385 | 1 | 189 | WRKY Transcription Factor Family | AT5G45050 | 28.351 | 6.56e-12 | 62.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g3385 | - | - | gmx:100777280 | 280.796 |