Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3384 | ATGGTTTTGGTTGATAGTGTCTGTGCAATTGTTGTAAAGGGTCATTGGAACAATCTCTTAAAACCCAAAATCGCTTCTACTCTCACTTCCACCACCATTCACCAATGTATCTTGCACCTCACACAACACCGTTACGAACCTTTTTTCATCTTCTCATTCTTCAAATGGCTTCATTCCATCCCACACTACACTCATTCCTTACAATCTTCATGGTCCATGCTTCACATACTCACCAAACACAGACATTTCAAAACTGCACACCAGGTGCTTGATAAAATTGCGCAAAGGGAAATACTTTCATCGCCTTCAGTTTTGACCTCTTTGGTCAGGATTCATGATGACCCTGAAGTTAATTCACATGTTTTGAGTTGGATTGTGATACATTATGCGAAATCGAAGATGACCCATGATGCGGTTCAGGTTTTTGAGCAGATGAGTTTGTGTAATTTAAAGCCTCATTTGCATGCTTGTACTGTGCTTTTGAACTCCTTGTTGAAAAATGGTGTTACTAATATGGTGTGGAAGGCTTATAAGAGAATGGTTCAAGACGGGGTTGTTCCTAATATCTATATTTATAATTGTTTAATTCACGCTTGTTTGAAATCGAGAGATGCGGAGAGGGCGGAAATTATACTGAATGAGATGGAAGGAAAGTGTGTGGTTCCTGATATTTTCACATACAATACTTTGATAGCTTTGTATTGCAAAAAAGGGATGCACTATGAGGCTTTGTCGGTGCAGGATAAAATGGAAAGAGAGGGGATAAATCTTGATATTGTTAGTTACAATTCTCTTATTTATGGATTTTGCAAAGAAGGTAAGATGAGGGAAGCTATGAGGATGTTCGGTGAAATCAAAATTGCCACTCCCAATCTTGTAACATATACTACATTGATTGATGGTTATTGTAAAACAAATGAACTGGAGAAAGCTCTGAGATTGCGTGAGATGATGGAGGCTAAGGGATTGTACCCCGGTGTTGTTACTTATAATTCGATTCTGCGCAAGCTGTGTTCTGATGGCAGGATAAGGGATGCGAACAAACTCTTGAATGAGATGAGTGAAAAAAAAATTCAAGCTGATAATATCACGTGCAACACACTGATTAATGCATATTGCAAGATAGGAGATTTGAGTTCTGCTTTGAAAGTTAAAAATAAGATGTTAGAAGCTGGACTGAAGCCTGATCCCTTTACATATAAAGCACTGATTTACGGGTTCTGTAAAACGAGCGAGCTTGAAAGTGCCAAAGAACTATTGTTTGGCATGCTTGATGCTGGATTTTCTCCAAGTTATTGCACTTACTCATGGATTGTAGATGGCTATTGTAAGAAAAACAATACAGATGCAGTTCTAGCACTGCCGGATGAGTTTCTGAGTAAAGGTATTTGTCTTGATGTTTCTGTTTACAGGGCATTGATAAGAAGGTTAAGCAAGATAGAAAGGATTGAATGTGCTGAAAAGTTGTTAGTTCATATGGAAGGGAAGGGTATTTCAGGCGATAGTGTTATCTACACTAGTGTTGCTTTTGCTTACTGGAAATCAGGGGACACAAATGCTGCCTCAAATGTGTTAGAAGAAATGGCTAGGAGGAGGTTGATGATCACTGCCAAAATCTATAGATGCTTTAGTGCTCCTGATGCTAGTGAAAACAAAGTTTCACAGATGTTCTGGGATCATGTGGTGGAAAGGGGTCTGATGTCAAGAAATACAATGTATAAAATAAAACAAATGCTGATATGA | 1743 | 0.385 | MVLVDSVCAIVVKGHWNNLLKPKIASTLTSTTIHQCILHLTQHRYEPFFIFSFFKWLHSIPHYTHSLQSSWSMLHILTKHRHFKTAHQVLDKIAQREILSSPSVLTSLVRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLLNSLLKNGVTNMVWKAYKRMVQDGVVPNIYIYNCLIHACLKSRDAERAEIILNEMEGKCVVPDIFTYNTLIALYCKKGMHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKIATPNLVTYTTLIDGYCKTNELEKALRLREMMEAKGLYPGVVTYNSILRKLCSDGRIRDANKLLNEMSEKKIQADNITCNTLINAYCKIGDLSSALKVKNKMLEAGLKPDPFTYKALIYGFCKTSELESAKELLFGMLDAGFSPSYCTYSWIVDGYCKKNNTDAVLALPDEFLSKGICLDVSVYRALIRRLSKIERIECAEKLLVHMEGKGISGDSVIYTSVAFAYWKSGDTNAASNVLEEMARRRLMITAKIYRCFSAPDASENKVSQMFWDHVVERGLMSRNTMYKIKQMLI* | 581 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 258 | 288 | IPR002885 | - | |
| Psa4g3384 | 580 | Gene3D | Tetratricopeptide repeat domain | 72 | 287 | IPR011990 | GO:0005515 | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 190 | 224 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 225 | 258 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 156 | 189 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 326 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 431 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 396 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 328 | 361 | IPR002885 | - | |
| Psa4g3384 | 580 | TIGRFAM | PPR: pentatricopeptide repeat domain | 260 | 286 | IPR002885 | - | |
| Psa4g3384 | 580 | Pfam | PPR repeat family | 290 | 339 | IPR002885 | - | |
| Psa4g3384 | 580 | Pfam | PPR repeat family | 361 | 409 | IPR002885 | - | |
| Psa4g3384 | 580 | Pfam | PPR repeat | 469 | 498 | IPR002885 | - | |
| Psa4g3384 | 580 | Pfam | PPR repeat | 503 | 532 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 501 | 535 | IPR002885 | - | |
| Psa4g3384 | 580 | Pfam | Pentacotripeptide-repeat region of PRORP | 130 | 273 | IPR033443 | - | |
| Psa4g3384 | 580 | Gene3D | Tetratricopeptide repeat domain | 425 | 578 | IPR011990 | GO:0005515 | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | IPR002885 | - | |
| Psa4g3384 | 580 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 3 | 575 | - | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 153 | 187 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 223 | 257 | IPR002885 | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Psa4g3384 | 580 | Gene3D | Tetratricopeptide repeat domain | 288 | 356 | IPR011990 | GO:0005515 | |
| Psa4g3384 | 580 | Gene3D | Tetratricopeptide repeat domain | 357 | 424 | IPR011990 | GO:0005515 | |
| Psa4g3384 | 580 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 3 | 575 | - | - | |
| Psa4g3384 | 580 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3384 | 115 | 570 | Glycosyltransferase | AT1G05670 | 31.183 | 1.02e-68 | 234 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g3384 | - | - | mtr:MTR_8g039270 | 1048.88 |