Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3359 ATGTCCGATAGAGTTGAAGCGTTGGAAGAGAAATTTGGTGCCTTAGAGGAATCTCTTCGTTTCCGAATGGAGGAGTTTCAAAAGTTGGTGATGGAGGAATTCGCGAAACTTAGAGAGAAACCCTCTTCCGAAGTCTCGTCGCCGCTTTCAGATGAAGTGTGTTCTGAGTTTAAAATGGCTGTGAAGAAGGTAGAGCTACCACCGTTTGATGGCGATGATCCGGTTGGAATGAGGTCCTTGATTGAAAGATATGGAGGAAGAAAGAGTGATAACCCATTTGAGGAGTTGAAAGACTTGCAGCAAACGGGAGATGTGGAGGAGTATATTTTAGAGTTTGAATATGTTTCTTCTCAGGTGGGACGACTTCCAGAGGAGCAATACCTAGGGTATTTCATGGGAGGTCTCAAATCTGAAATACGTTTGAGGGTAAGGACATTTAACCCTAGAACACGTGTGGAAGCCATGAAAATTGCTCGAGATGTTGAAACAGAGCTTCGTGGAAGTCTGGTACGCAGAAGCAGTGGCACACGTCAATGGAAGGGAGGAAGAGAGTCACACTATGGACCGGGTGGAGTAGGAGAAAATGGGTCGGGTTCTAACCCGAGTGGTGGAAGTGGATTAGGGTTGCAGCCCAAATTGGGTCAGTACAAGAGTAATTTCGGGTCAACTTACACAAATGGAGGCCCAACAAAAACGGCCCAGTCCAGCATCAATTCCAACCCTAATTCCAGTAGGGGTATGGGACGGCCAGGACAAAATGCAGAAACACGCAGTAACCTGAGTAAAAACAGAGGAATTCGGCATCTTCCATACTCCGAACTCATGGACAGGAAGGCGAAAGGTTTGTGCTTCCGGTGTGGCGAACGGTTTCATCCTCTACATCAATGCGTAGAGAAGCAATTTCGCTTGGTGATTCTTGGAGATGATGAAACAATTAATGAAGAAGGAGAGGTGCTTGCAATAGAACTCAAGGAAGAAGAATGGAGTGTAATGCGTTGGGGGTTTTGGAGTGACAGAAGTGAAGGATTCATGGAAGCCTTCTACAACGATGAGGTTGGAGGCACGGTGATGGTATCGGAGTACAGATTTGGCCGACAGTGGAGCAAGCCATTGTTTCATCGATCCAAAAGTTGCGGCGGCACTGGGTTTAGTTGTGGAACCAAATACAATAATGGGGATTTCACTACTCGATTAACTGCTTATGTGTTGGAATTGGGAGATTTGGATTTGATACTGGGGGCAACTTGGATGAGACAATTTGGGAAGGTTACCTTGGGAAAACATGGGGCTGTTTTGATGCAAAAGAAGCGACCGATCGCATTTTTCAGCAAGGCACTTTCAAAAAATAACCTTACAAAATCGGCCTACGAGAAGGAATTTATGGCACTTGTATTGGCAGTACAACATTGGAGACCCTATCTAGTGGGGAGGAAATTTGTAGTCTATTCTGATCAAAAGAGCCTCAAACACCTGCTGCAACAAAGAATAACAACGGCTGACCAACAGAATTGGATGTCAAAGCTCTTAGGTTATCAATTTGAGGTTATTTATAAACCTGACCTTGAAAACAAGGTGGCTGATTCTCTGTCCAGGATGTTTGAGGAAGCGAAATTAAAATCAATCACCTCTTTCCCGTTATGGTTACAAATGCAGCAAGTGCAACAGGAGGTAAGAGAAGACGAGCAACTGAAAAGGGTGATCAATGATATAGAATCTGACCCGAATACTCACCCTGGACTTTCCCGTTATGGTTACAAATGCAGCAAGTGCAACAGGAGGGCAGACAGTGGAGGTACAACTTGGGTGGATGAATCTATGTTGAAAAGTCAATTTCCCCATGTTAGCCTTGAGGACAAGGCTATTGTTGCAGGAGTGGGCAATGATAGAGAGTTGGATAATGGGCCTGTGAGGAAGAAGCATTTATATTTTATTAAGAGTATGCATATCAAACACGGGTCTCAGTTCCGGAAAGGTGATTTCATCAAACAAAATGGAATTGTGAGTAGGCGTGATTTCTTTTGCCATCGTGAAGGTAGAACTTCCTTGAAAATCATTGAACCATCGAAAGAACAAAGAAATAGAGAATCAACTAGGTGTGAATGTAAAACTCATTTGCGAATTTCTTTACAAAAAACTCATGATATGTTTCCAAGTGAGTGGCGAGTTACAACATTTGTTGTTGAACACAATCATACTTTGCTAACTCAATCAGAAGTGCGGTTCTTACCAGCTAATCGAATTATCTCAGATGATTATTCTGAACAAATTTTCTTGTTAAAGGAAGGTGGACTTTCAGTTAGACAGTTAATGCGTGTCATAGAGCTAGAAAAAAATGTGGAGCATGGTTATCTTCCATTTATTGAAAAGGATGTTCGTAATCTGTTTTTGAAAGCCAAGAAAAAAGTTGAAATAATTGATGTTGTTGATCTTCTTAAGTATTGTGATGATGCAAAGAAGAGTTGCTCTAAATTTCAGTATGCATATACACTTGACGAAGAAAGAAGGCTAGAGCATATATTTTGGTCTCATGCTTATTGTTTTGATTGGTACCAAGAATATGAGGATGTTGTTGTGTTTGATACTACATACAAGGTAAATTCTTATGAAATGCCATTTGGAATTTTTGTGGGTATGAATAATCATGGAAAGACTATACTTTTTGGATGTGCACTCTTACGAAATGAAAAAACTTCTGCATTTCGTTGGTTGATGAAGACTTTTATATCTTTGATGAAGAAGCCACCAAAAACTATATTAACAGATCAAGATCCATGGATGAAAGAAGGAATTTCAAAAGAGTTGTCATCAACAAAACACAGTTTTTGCATATGGCACATCACTTTCAAGTTTAGTTGTTGGTTTAATGCTATACTCCGAGACAAATATCCAAAATGGTGTTCTGATTTTTATGGTTTGTATAAGTTGGAGACACGTGAAGAATTTGAACATCACTGGCCAAAAGTTGTTGCTAAGTATAACTTGCAATCAAATAAACATGTGAAAGAGTTGTATGAAATTAAAAGTTATTGGGCACTTGCTTATCTTCGTGACTATTTCTTTGGTGGAATGACAACCACAGGTAGATCAGAGAGTATTAATGCATTTATCAAAAGATTCATAAATTCCCATACAACTTTAAGTGATTTTACAAAGCAGGTATGTTCTGATTTCTAA 3174 0.4036 MSDRVEALEEKFGALEESLRFRMEEFQKLVMEEFAKLREKPSSEVSSPLSDEVCSEFKMAVKKVELPPFDGDDPVGMRSLIERYGGRKSDNPFEELKDLQQTGDVEEYILEFEYVSSQVGRLPEEQYLGYFMGGLKSEIRLRVRTFNPRTRVEAMKIARDVETELRGSLVRRSSGTRQWKGGRESHYGPGGVGENGSGSNPSGGSGLGLQPKLGQYKSNFGSTYTNGGPTKTAQSSINSNPNSSRGMGRPGQNAETRSNLSKNRGIRHLPYSELMDRKAKGLCFRCGERFHPLHQCVEKQFRLVILGDDETINEEGEVLAIELKEEEWSVMRWGFWSDRSEGFMEAFYNDEVGGTVMVSEYRFGRQWSKPLFHRSKSCGGTGFSCGTKYNNGDFTTRLTAYVLELGDLDLILGATWMRQFGKVTLGKHGAVLMQKKRPIAFFSKALSKNNLTKSAYEKEFMALVLAVQHWRPYLVGRKFVVYSDQKSLKHLLQQRITTADQQNWMSKLLGYQFEVIYKPDLENKVADSLSRMFEEAKLKSITSFPLWLQMQQVQQEVREDEQLKRVINDIESDPNTHPGLSRYGYKCSKCNRRADSGGTTWVDESMLKSQFPHVSLEDKAIVAGVGNDRELDNGPVRKKHLYFIKSMHIKHGSQFRKGDFIKQNGIVSRRDFFCHREGRTSLKIIEPSKEQRNRESTRCECKTHLRISLQKTHDMFPSEWRVTTFVVEHNHTLLTQSEVRFLPANRIISDDYSEQIFLLKEGGLSVRQLMRVIELEKNVEHGYLPFIEKDVRNLFLKAKKKVEIIDVVDLLKYCDDAKKSCSKFQYAYTLDEERRLEHIFWSHAYCFDWYQEYEDVVVFDTTYKVNSYEMPFGIFVGMNNHGKTILFGCALLRNEKTSAFRWLMKTFISLMKKPPKTILTDQDPWMKEGISKELSSTKHSFCIWHITFKFSCWFNAILRDKYPKWCSDFYGLYKLETREEFEHHWPKVVAKYNLQSNKHVKELYEIKSYWALAYLRDYFFGGMTTTGRSESINAFIKRFINSHTTLSDFTKQVCSDF* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3359 1057 MobiDBLite consensus disorder prediction 169 205 - -
Psa4g3359 1057 Pfam FAR1 DNA-binding domain 661 734 IPR004330 -
Psa4g3359 1057 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 667 1052 IPR031052 GO:0006355
Psa4g3359 1057 Pfam RNase H-like domain found in reverse transcriptase 429 511 IPR041373 -
Psa4g3359 1057 CDD RNase_HI_RT_Ty3 429 533 - -
Psa4g3359 1057 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 667 1052 - -
Psa4g3359 1057 Pfam MULE transposase domain 856 947 IPR018289 -
Psa4g3359 1057 MobiDBLite consensus disorder prediction 227 263 - -
Psa4g3359 1057 SUPERFAMILY DNA/RNA polymerases 428 518 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3359 Psa-Chr4 285889777 285898056 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa4g3359 MULE 8.6e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3359 - - gsj:114409893 737.258