Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3338 ATGGAAGGCAACAACACCGTTCATGCTTCAGATTCAGTTGATAAATCTAGGATTGTAGAAGTGAAACCCTTGCGTAGTTTAGCTCCTGTATTGCCGAAAAATATTCAGTCTTGTTTTCCTGCCAAATACCCATCTGGGTTTCCTCCATTTTATTCATTTGAGAAACCCCAAGAAATTCCTCTTCCAAAAGAAGCTGAGGAAATTCCCGTTGATGCTGAGACAGCCGAGGAAATTCCTGTTGTTTCTGCGAAAGAAACGACTCGAGAAACTCCTCTTGCTGCTAAAGTGACTCCAATAAGGTTCTACAAGAGTTCGGTTGACGAAGAAGTGAATCCACGAGCAGACGGAGATGTTAATTCGTTTTCAGAAGGCTTGAACGGTGATGAATGTGTTGATAGTACACGGAAGCGAGGTACAGAGAATATACAGAATTGTAAAGAGTTTCTTAAAAGGAAGAAGAATAAGAAAACTCGGGAGGTGGCCGGTGATGGTCAAAGTTCTAATATTGGTGTTAACCCGTCTCGAAATGCGGACGGAGATCATGAATCGGTTAATCGCGTGCTCATGACATTTGATTCGATTCGAAGAAGGCTATGCCAGCTTGAGGATTCAAAGGAGCTGAATAGTTCACATGCCATCAAGCGTGCGGATCTCAGAGCAAGCAATGCTTTGACATGTAAAGGGGTTAAAACGAATTTGAGGAGAAGAGTGGGAGTGGTGCCTGGGATTGAGGTTGGGGATATTTTCTTTTTTCGAATGGAAATGTGTCTTGTGGGTTTACACGGTCAATCGATGGGTGGAATTGATTACATGAACATCAAGGACGGGTCGAAGGAGGATACTGTGGCGTTAAGTGTTGTTTCGTCAGGAGTATATGGTGATGATACGGAGGATAATGATGTTTTAGTTTATAGTGGTCAAGGTGAGAATTTCAACAAGAAAGATAAGCATGTGACTGATCAGAAGCTCCAAAGGGGTAATCTTGCTTTGGACAGAAGTGCGCAACGGCACGACGAAGTTAGAGTCATTCGGGGATTGAGAGATGCTACAAATAGAAGTGCAAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAGAGGGAAATCTGGTGGTGGTATATTTAAGTATAAGTTGGTAAGGTTACCTGGACAAAAAAGTGCTTTTGCTACTTGGAAATTGGCTCAAAAGTGGAAAGCAGGTTCTGCTTCAAGGAATGGCTTTATCCTTGCTGACCTCTCCAATGGAGTTGAAAGTATTCCAGTATCACTTGTCAATGATGTTGATGATGAAAAAGGTCCTGCCTTTTTCACTTATTTCATGTCTCTCAAAAAACCGAAACCTTTTGGTTTAGTGCAGCCTTCGTTTGGCTGCAATTGTAACAAAGCATGCATCCCTGGTGATTTGAACTGTTCTTGCATTCAAAGAAACGAAGGTGATTTTCCGTATACTGCAAATAGTATTCTAGTGAGTCGGAAGCCGCTGATTCACGAATGTGGCCCTATGTGTCGGTGTCTTCCTAACTGCAAAAATCGAGTATCGCAGACTGGTTTAAAGCAACAGATGGAAGTTTTCAAAACAAAGGATAGGGGCTGGGGGCTTCGGACACTGGATCCTATTCGTGCTGGTAGCTTTATTTGCGAATATGCAGGAGAAGTTGTTGACAGAGCTAAGGTATGTCAGAATGGTGAAGGAGATGATGATGAATATATTTTCGACACAAGCCGTATTTATCAACCATTCAAGTGGAATCATGAACCTGGCTTACTGGAAGAAGTAAGTTCAAATGTTCCGAGTGAAGATTATACTATACCATCTCCTCTCATTATAAGTGCCAGGAATGTGGGAAATGTGGGTAGATTCATGAACCATAGTTGCTCCCCGAATGTATTTTGGCAGCCGGTCTTATATGCGGAAAACAATCAATCCTTTCTCCACATTGCATTTTTTGCCCTTAAACATATTCCTCCTATGGCAGAGTTAACATATGATTATGGATTTGTCCTTGCCGGTCATGCCGAGGGTAGTAGTGCACAAAGAAGGAAAAAGAAATGCTTGTGTGGATCAGCAAAGTGCCGTGGTTTCTTTGGTTGA 2109 0.4187 MEGNNTVHASDSVDKSRIVEVKPLRSLAPVLPKNIQSCFPAKYPSGFPPFYSFEKPQEIPLPKEAEEIPVDAETAEEIPVVSAKETTRETPLAAKVTPIRFYKSSVDEEVNPRADGDVNSFSEGLNGDECVDSTRKRGTENIQNCKEFLKRKKNKKTREVAGDGQSSNIGVNPSRNADGDHESVNRVLMTFDSIRRRLCQLEDSKELNSSHAIKRADLRASNALTCKGVKTNLRRRVGVVPGIEVGDIFFFRMEMCLVGLHGQSMGGIDYMNIKDGSKEDTVALSVVSSGVYGDDTEDNDVLVYSGQGENFNKKDKHVTDQKLQRGNLALDRSAQRHDEVRVIRGLRDATNRSAKIYMYDGLYKIQDSWIERGKSGGGIFKYKLVRLPGQKSAFATWKLAQKWKAGSASRNGFILADLSNGVESIPVSLVNDVDDEKGPAFFTYFMSLKKPKPFGLVQPSFGCNCNKACIPGDLNCSCIQRNEGDFPYTANSILVSRKPLIHECGPMCRCLPNCKNRVSQTGLKQQMEVFKTKDRGWGLRTLDPIRAGSFICEYAGEVVDRAKVCQNGEGDDDEYIFDTSRIYQPFKWNHEPGLLEEVSSNVPSEDYTIPSPLIISARNVGNVGRFMNHSCSPNVFWQPVLYAENNQSFLHIAFFALKHIPPMAELTYDYGFVLAGHAEGSSAQRRKKKCLCGSAKCRGFFG* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3338 702 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 102 702 IPR025794 GO:0016571
Psa4g3338 702 Pfam SAD/SRA domain 237 390 IPR003105 -
Psa4g3338 702 Pfam Pre-SET motif 419 517 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g3338 702 SMART preset_2 415 509 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g3338 702 SUPERFAMILY SET domain 424 699 IPR046341 -
Psa4g3338 702 SMART set_7 525 677 IPR001214 GO:0005515
Psa4g3338 702 Gene3D - 220 406 IPR036987 -
Psa4g3338 702 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 11 700 - -
Psa4g3338 702 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 11 700 - -
Psa4g3338 702 SMART G9a_1 233 390 IPR003105 -
Psa4g3338 702 ProSiteProfiles SET domain profile. 525 671 IPR001214 GO:0005515
Psa4g3338 702 ProSiteProfiles Pre-SET domain profile. 461 522 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g3338 702 Gene3D SET domain 407 701 IPR046341 -
Psa4g3338 702 ProSiteProfiles YDG domain profile. 238 386 IPR003105 -
Psa4g3338 702 ProSiteProfiles Post-SET domain profile. 686 702 IPR003616 -
Psa4g3338 702 Pfam SET domain 536 671 IPR001214 GO:0005515
Psa4g3338 702 SUPERFAMILY PUA domain-like 222 407 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3338 Psa-Chr4 284105644 284109071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3338 1 702 Su(var)3-9 homologs AT1G73100 48.148 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa4g3338 SAD_SRA 1.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3338 K24405 - gmx:100800651 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3338 4 284105644 284109071 Psa4g3338 4 284105644 284109071 ECH