Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3316 ATGCTTTGGCTTCGGGATCATCCAAGGTGTCTAAGCTCTCACAAAGAGTTGCAATTATGGACTCATATGTGTTGGGTTGCTCTCTCTAATTTGATGGCACTAACCACCAACAAGAACAACATCATGGATGCTTCGGTTATTGCCCACTGTTTTACAATCACGGAATCAGAAATCAAAGGGGAAGATACTGATCTGGCATCAAAGTGTGCCCTCGATGACTTACCGGAACTTTCTACTCGAAATCCTTCCAATGATTGTCACACTGCTTCTGTTTCAGAGCTCAATGCACCCGAGTCCCATGGATCTGAGGAATCAACGGTTATAGTGGAGTATCTAGGTCCATTCGAAGGTTCTGAACCAACTCTAACTTTATTGAGGAAATCGGTTCCTGACAGAAAGGATATTCGCATACGACCTGTTAGCAAGCGTACTGAAAAAACTCCAAAGAGCAGACCAAAGAGTGGAGAAACTGTGTCAAAATCCCATTCATTTCTGTTTCTTTTTTTGTCATCCGCTCTAACTGCGACCATGGCTGATGAATTGATTCTTCTAGATTACTGGCCAAGTCCGTTCTGGATGAGGCTCAGAATAGCCCTTGTTGAAGAGGTTCTGATGAAAGAAGCTGAAGTGAAAGAGAAAAGGCCACTTAAAGGGAGAAAGTTAAGAGACAAATCTAAGATAAATGTTAGGACATTTAGCTCTGTGCATACAGCTAGAAGCAAGGCTGTTGGTAGAAGTGTGCCAAATGATTTGGTAATGGGCATTGATGCAACTGACAAAGACAATGAATTGGCTGCAACTGAGTATATTGATGATATTTACAAGTTTTACAAACTCCGTGAAGGTGATTGTCCTGTACATGATTACATGGTTTCACAGCCCGATATAAATGCTAAGATGAGAGCGATTCTTATTGAATGGTTGATTGAAGTTCATCGAAAATTCGAACTCATGCCAGAAATTTTCTATCTGACTCTTAACATAGTTGACCGATTCTTGTCCATGAAGGTTGTTCCTAGAAAGGAACTTCAGCTTATTGGCATAAGCTCAATGCTTATTGCATCTAAGTATGAAGAGATATGGGCACCAGAGGTTACAGATTTTGTATGCATATCAGACAATGCCTATGTTAGAGAACAGGTTTTGGTTATGGAGAAAACAATCCTGGAAACCTGGAATGCTCTTCCCGACCTGTCATTGAGCCGTGTCGCGATTCCTGAAGACAGGGGAATAACTGGTGCAATTCGAGCGATTGCGCACCAGCCCTATGCAAAAGACATTTTGATGTTTGGTGTTGGTCTTGTTCCTGACGTGCCTGTTGGTGCCATTGCAGTTACTGCTCGACGATATGATGCAGTTGTCACTGCTTTGCTTTGTAATTCTCCTGCAACTATCAGCAACAATTGA 1407 0.42 MLWLRDHPRCLSSHKELQLWTHMCWVALSNLMALTTNKNNIMDASVIAHCFTITESEIKGEDTDLASKCALDDLPELSTRNPSNDCHTASVSELNAPESHGSEESTVIVEYLGPFEGSEPTLTLLRKSVPDRKDIRIRPVSKRTEKTPKSRPKSGETVSKSHSFLFLFLSSALTATMADELILLDYWPSPFWMRLRIALVEEVLMKEAEVKEKRPLKGRKLRDKSKINVRTFSSVHTARSKAVGRSVPNDLVMGIDATDKDNELAATEYIDDIYKFYKLREGDCPVHDYMVSQPDINAKMRAILIEWLIEVHRKFELMPEIFYLTLNIVDRFLSMKVVPRKELQLIGISSMLIASKYEEIWAPEVTDFVCISDNAYVREQVLVMEKTILETWNALPDLSLSRVAIPEDRGITGAIRAIAHQPYAKDILMFGVGLVPDVPVGAIAVTARRYDAVVTALLCNSPATISNN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3316 468 CDD CYCLIN 300 389 IPR013763 -
Psa4g3316 468 SMART cyclin_7 306 390 IPR013763 -
Psa4g3316 468 Gene3D - 286 392 - -
Psa4g3316 468 PANTHER CYCLIN-B1-4 209 391 - -
Psa4g3316 468 MobiDBLite consensus disorder prediction 81 102 - -
Psa4g3316 468 Gene3D - 272 285 - -
Psa4g3316 468 ProSitePatterns Cyclins signature. 301 332 IPR006671 -
Psa4g3316 468 SUPERFAMILY Cyclin-like 261 391 IPR036915 -
Psa4g3316 468 MobiDBLite consensus disorder prediction 135 156 - -
Psa4g3316 468 PANTHER CYCLINS 209 391 IPR039361 -
Psa4g3316 468 Pfam Cyclin, N-terminal domain 272 391 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3316 Psa-Chr4 281111784 281114328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3316 228 389 Core Cell Cycle Gene Families AT2G26760 62.963 5.57e-66 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3316 K21777 - gmx:547782 267.314