Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3301 ATGTTGATACCACTTTCAATTGTAGATGATGTTGCTATCGTTGATTTAGGTCAACAACATCATCGCCACAACATGTTACCTGTGTATGTTCTCTTTGATTCTCGTACCATGTCTCACAGCCACCACCCACCACCACCAACAACAACAACAACAACACCGCCTTGGACTGTGATAGACCAAGCTCTTCTCTTTGATTCTCGTATCGCCAACATGTCTCAGAACCACAACAATGTTCCAACAAGATTAATGTCTCACAACCACAACAGTGTTTCATCAAGATTCACTTCACCAACAGTGTCTGTGGTAGATGAAACTGTTCTGTATGATTTTCATATCGGCAATGTTCCAAGAAGATCAAGGAATCATCCATCATGGTCAATTAATCATCAAACGGGCCACCATCACCACCACCACCACAATGGTACTCGAGCTTCTCCAAATGTGATCGGTGTTCAAAATACTCGAGCTTCTCCGGTGGTGATCGGTGTTCAAAATACTAGAGCTTCCCCGGTGGTGATCGGTGTTCAAAATACTAGAGCTTCTGGTGCTCAAGATACTTGTCAACATGTCACAACATCAACAACAGATGCTGAATCCATCTGTTGCATTTGTCTTGTTCACTTGTCTAATGGTTCTTCCATGCCAATTCGGCTGCGCTGCTCTCATGATTTTCATACCGACTGCATTCAAAAATGGATCAACATTAAGAAAACTTGTCCACTTTGTCGCGCCAATGTTTAA 741 0.4265 MLIPLSIVDDVAIVDLGQQHHRHNMLPVYVLFDSRTMSHSHHPPPPTTTTTTPPWTVIDQALLFDSRIANMSQNHNNVPTRLMSHNHNSVSSRFTSPTVSVVDETVLYDFHIGNVPRRSRNHPSWSINHQTGHHHHHHHNGTRASPNVIGVQNTRASPVVIGVQNTRASPVVIGVQNTRASGAQDTCQHVTTSTTDAESICCICLVHLSNGSSMPIRLRCSHDFHTDCIQKWINIKKTCPLCRANV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3301 246 PANTHER OS05G0163400 PROTEIN 70 246 - -
Psa4g3301 246 SMART ring_2 201 242 IPR001841 -
Psa4g3301 246 Pfam Ring finger domain 201 243 IPR001841 -
Psa4g3301 246 ProSiteProfiles Zinc finger RING-type profile. 201 243 IPR001841 -
Psa4g3301 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 246 IPR045191 GO:0061630
Psa4g3301 246 SUPERFAMILY RING/U-box 197 246 - -
Psa4g3301 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3301 Psa-Chr4 279753446 279761123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3301 187 246 C3H Transcription Factor Family AT1G74620 40.000 7.54e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3301 - - gmx:102660969 66.6254