Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3299 ATGGACAAAGCATCCAAAGAAGAGTATTTGGCTTCATTGCGGCGGCAAAGCAGTGGTTTTTCAAGAGGCATTTCTAAATACCGTGGGGTTGCTAGGCATCACCACAATGGTCGGTGGGAAGCTCGCATTGGAAGAGTTTGTGGTAACAAGTATCTCTACTTGGGCACATACAAAACTCAAGAGGAAGCAGCAGTGGCATATGATATGGCAGCAATAGAGTACAGAGGAACCAATGCAGTGACAAATTTTGACATAAGCAACTACATTGACAAATTGAACAAGAAGAACAAAAATACTGAAACAGAACAAACACAGCCACAAACAACAACAAAAACAGAAATTGTTCCTAATAATTCCTCTGATTCCGAAGAAACATCACAAGAACAAACACCAATAGCTACACCTCCGCCCCCACCACCACCCGAAAATCTAAAAAAACCCGAACCTTTTCAGCAACAAGTTCAACAACAACAACAACAAGAAGATGTTCCTCCAATTGTTCAAGAACACACATTGGTTAACGTCATGGACATTTATCTTGACCAAGACCTACCATGGAGCTACATGTACAACGGTTTATTAGAGTTTCAAGACACAAACATGTCATTCAACAACGGGGAAGATTTGATTGATATATTTGACGGCGCAGGGTTTGTGGAAGACATTGGTTTAATGTTCAACACAGAAGAGCCTTGTGTTGTCGGTGAAAGTGATATCAATATCAGTGAAGTTTTGGAGGGAATTGATTTATTAAACGGAAATGCTGAAAACATGGTTGTGGATAATAATGATAATAACATTAACAAGGAGAAGGAAATATTGTCCTTAGAATCATCATCTTCTTCATCATCATCTTCAACAACTACTACAGTTTCTTTGTAA 882 0.39 MDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGTNAVTNFDISNYIDKLNKKNKNTETEQTQPQTTTKTEIVPNNSSDSEETSQEQTPIATPPPPPPPENLKKPEPFQQQVQQQQQQEDVPPIVQEHTLVNVMDIYLDQDLPWSYMYNGLLEFQDTNMSFNNGEDLIDIFDGAGFVEDIGLMFNTEEPCVVGESDINISEVLEGIDLLNGNAENMVVDNNDNNINKEKEILSLESSSSSSSSSTTTTVSL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3299 293 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
Psa4g3299 293 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 MobiDBLite consensus disorder prediction 97 138 - -
Psa4g3299 293 Gene3D AP2/ERF domain 25 86 IPR036955 GO:0003700|GO:0006355
Psa4g3299 293 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 287 - -
Psa4g3299 293 MobiDBLite consensus disorder prediction 99 130 - -
Psa4g3299 293 Pfam AP2 domain 25 76 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Psa4g3299 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3299 Psa-Chr4 279676766 279679512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3299 1 95 AP2-EREBP Transcription Factor Family AT3G54320 88.421 1.67e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g3299 AP2 6.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3299 - - gsj:114422618 275.018