Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3296 ATGGGATATGGTACAAGAAAACTCTCAGATGTGTATGAAGTTTCAGAGATTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAGAAAATCAAACAATGATGATGAAAAATCACAATCACAATCAAAATCACAATCACAATCACAAGTAGCAATCAAAACACTTAGAAGATTAGGTACTTCAAATAATTTACCAAGGAAAAAAGATGGTGGTGAAAATAGCACAGAAACTATGATGAAGTTCCCTACAATGAGACAAGTTTCTGTCTCAGATGCATTACTAACAAATGAGATTCTTGTAATGAGAAGAATAGTCGAAAACGTTTCGCCGCATCCGAACGTTATCGATCTTTACGATGTTTATGAAGACACAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGCGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAGACTGAAGCTTCAACTGTGACGACAAAGGCGACAAAGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAGCAACAAATGATATTGAATGGAAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAATTTGATTTCAAGTCTTCTAACTGTTGATCCTGCTAAAAGACCTAGTGCTCAAGAGCTTTTAAGTGATCCATGGGTTAAAGGTGAGAAGGCCAAAGATGATCAAATGGACCCTGAAATTGTGTCAAGGCTACAAAGATTCAATGCAAGACGCAAACTTCGCGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATTTTTCTAAGAACTAAAAAATTGAAATCCTTGGTTGGATCCTATGATCTCAAAGAAGATGAAATTGAAAATCTTAGGATGCACTTCAAGAAAATATGTGCAGATAGAGACAATGCGACTCTTTGTGAGTTTGAAGAGGTGTTAAAAGCAATGAAAATGCCATCATTGATCCCTTTCGCAGCTCGTATATTTGATTTATTTGACAACAACCGCGATGGAACGGTTGACATGAGAGAGATTCTTTGTGGCTTTTCGAGTCTCAAGAACTCCAAAGGAGAGGATGCTCTCCGTTTGTGTTTTCAGATGTATGACACAGATAGATCAGGATGCATCACCAAGGAAGAAGTAGCATCTATGCTAAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAATTGGATGAGATTTTTGACTTAATGGATGCCAATAGTGATGGAAAAGTTACATTTGATGAATTCAAAGCTGCAATGCAAAGAGATAGCTCTCTTCAAGATAGAGGAATGGAGACTTCGTTCTAG 1332 0.3746 MGYGTRKLSDVYEVSEILGRGGFSVVRKGTRKSNNDDEKSQSQSKSQSQSQVAIKTLRRLGTSNNLPRKKDGGENSTETMMKFPTMRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEASTVTTKATKYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPAKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEDEIENLRMHFKKICADRDNATLCEFEEVLKAMKMPSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCITKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANSDGKVTFDEFKAAMQRDSSLQDRGMETSF* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3296 443 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Psa4g3296 443 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Psa4g3296 443 Pfam EF-hand domain pair 360 429 IPR002048 GO:0005509
Psa4g3296 443 MobiDBLite consensus disorder prediction 25 76 - -
Psa4g3296 443 Pfam Protein kinase domain 94 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3296 443 Gene3D - 242 437 - -
Psa4g3296 443 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Psa4g3296 443 SUPERFAMILY EF-hand 271 434 IPR011992 -
Psa4g3296 443 CDD EFh 362 429 IPR002048 GO:0005509
Psa4g3296 443 PANTHER SERINE/THREONINE-PROTEIN KINASE 166 429 - -
Psa4g3296 443 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 159 - -
Psa4g3296 443 MobiDBLite consensus disorder prediction 40 63 - -
Psa4g3296 443 CDD EFh 328 387 IPR002048 GO:0005509
Psa4g3296 443 Gene3D Transferase(Phosphotransferase) domain 1 4 160 - -
Psa4g3296 443 SMART efh_1 361 389 IPR002048 GO:0005509
Psa4g3296 443 SMART efh_1 325 353 IPR002048 GO:0005509
Psa4g3296 443 SMART efh_1 403 431 IPR002048 GO:0005509
Psa4g3296 443 ProSiteProfiles EF-hand calcium-binding domain profile. 321 356 IPR002048 GO:0005509
Psa4g3296 443 ProSiteProfiles Protein kinase domain profile. 12 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3296 443 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Psa4g3296 443 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Psa4g3296 443 Pfam EF hand 329 345 IPR002048 GO:0005509
Psa4g3296 443 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 18 159 - -
Psa4g3296 443 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 166 429 - -
Psa4g3296 443 Gene3D Transferase(Phosphotransferase) domain 1 164 228 - -
Psa4g3296 443 SUPERFAMILY Protein kinase-like (PK-like) 10 242 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3296 Psa-Chr4 279404439 279407457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3296 167 443 EF-hand Containing Proteins AT4G04720 27.500 1.33e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Psa4g3296 EF-hand_7 3e-14 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3296 K13412 - gmx:732616 605.905