Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3288 ATGGGTCGTCGCAAAATTGAGATTGCGAGAGTGAAAGACTCGGCTGCAAGGCAAGTCACATTCTCAAAGCGTCGAACAGGTTTATTCAAAAAAGCAAACGAGCTTGCTATCTTATGCGGCGCACAAATTGCTATTGTTGTGCTATCGCCTGGGAATAAACCTTACTCTTTTGGGCACCCAAGTGTTGATGCTATTGCGTCCAAGTTTTTTCAAAAAGAACCCAATCGAAGTGATGTTCTAGGAAACTCTTCTATCATGGAAGATCTCAATCAACAACTTGATGACTTGAAGACACAAATAAATGTGGCTGAAAATGAAGCTAAGGTCCATGATGAGATTCTAAATAAACATAAAGCTGAAAATTTCACTCAACTCAAGGAATTGAAAGATTCATTTGTAGAGTTTACGGATATAGTGAAATCACGTATTTGTGAGTTTGATATATCGCAATCTATGATCCTTCTGGCAAAAGAACCGGTTATTGGAGTTAAAAATGAAGGAAAAGAAAAGAAAACATTAATGTTTTAG 528 0.3731 MGRRKIEIARVKDSAARQVTFSKRRTGLFKKANELAILCGAQIAIVVLSPGNKPYSFGHPSVDAIASKFFQKEPNRSDVLGNSSIMEDLNQQLDDLKTQINVAENEAKVHDEILNKHKAENFTQLKELKDSFVEFTDIVKSRICEFDISQSMILLAKEPVIGVKNEGKEKKTLMF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3288 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 PANTHER MADS BOX PROTEIN 2 166 - -
Psa4g3288 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Psa4g3288 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g3288 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 166 - -
Psa4g3288 175 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Psa4g3288 175 Coils Coil 86 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3288 Psa-Chr4 278890206 278891096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3288 1 157 Type I MADS-box Gene Family AT2G34440 37.209 1.06e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g3288 SRF-TF 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3288 - - mtr:MTR_4g131030 183.726