Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3283 ATGGACATGACCTCAAGAAACATAGATGTTGATTCTCAAACACCACCTTCGATTCCACAACCCAACAACAACAATAACATAACACCAACAACAACCTTATTAAAGTCTTCACCTTTCACTAACGGCACACACAAACGCCACCTGCCCACCACCACCACCACTCCACCACCGCCATCCATGGTGGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCGTCTCTAGGTGGACATGCACTTGATGGATGTGGAGAATTCATGCCTTCGTCATCCGTTAATCCAAACGACCCTAGATCCCTCAAATGTGCTGCTTGTGGCTGTCACCGGAATTTCCACCGCCGTGAACCTCAAGAACAACACATCGTCCCCACCACCAACACCACCACCGTCAACGCCACCACCAACACCACCACCAACGCCACCACAAACCCCACTTTTCTTAACTGCATCTACACTCCAGCATCAACAACAGTTCCACCACCACAACCACCGCCACCATTACAACTACCACACCGTGGCCCAATCAGTCAAAGCACGAGCCCAAGTCAAAGCACAAGCCCAACGTCAAGCCCAAGCCCAACGACAAAATTCAGCAAGGAGCAGAAAGAGATGATGTATGGATTTTCTGAAAAACTGGGTTGGAGAATGCAAAAGGGTGATGATGGAATGGTTCAGAAATTCTGCAATGACGTTGGTGTTTCAAGAGGGGTTTTCAAAGTTTGGATGCACAATAACAAGAATTTGAGGAAGAGACCAGAATCTGAGGTTGGAATTGCAACTCCAATAAGCGATAATAAGAACAACAACAACAATGATGGATCCAACAATGTCATTCATATGGACGAAGATGGATGTGTTAATGTCCATGTTTCTTCTGTTAATGTTTTATCCTCTTAG 897 0.4571 MDMTSRNIDVDSQTPPSIPQPNNNNNITPTTTLLKSSPFTNGTHKRHLPTTTTTPPPPSMVVSYKECLKNHAASLGGHALDGCGEFMPSSSVNPNDPRSLKCAACGCHRNFHRREPQEQHIVPTTNTTTVNATTNTTTNATTNPTFLNCIYTPASTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPTSSPSPTTKFSKEQKEMMYGFSEKLGWRMQKGDDGMVQKFCNDVGVSRGVFKVWMHNNKNLRKRPESEVGIATPISDNKNNNNNDGSNNVIHMDEDGCVNVHVSSVNVLSS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3283 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 45 249 - -
Psa4g3283 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 247 IPR006455 -
Psa4g3283 298 MobiDBLite consensus disorder prediction 172 199 - -
Psa4g3283 298 Gene3D - 175 250 - -
Psa4g3283 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Psa4g3283 298 SUPERFAMILY Homeodomain-like 178 251 IPR009057 -
Psa4g3283 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Psa4g3283 298 MobiDBLite consensus disorder prediction 1 58 - -
Psa4g3283 298 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Psa4g3283 298 MobiDBLite consensus disorder prediction 1 50 - -
Psa4g3283 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3283 Psa-Chr4 278426912 278428505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3283 9 246 ZF-HD Transcription Factor Family AT5G15210 43.033 4.23e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa4g3283 ZF-HD_dimer 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3283 - - gmx:102660309 249.21